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Functional site class: PP1 docking motif
Functional site description: Protein phosphatase-1(PP1) is a major Ser/Thr protein phosphatase of the eukaryotic cell. PP1 naturally occurs as three different isoforms in vertebrates, encoded by the alpha, gamma1, and delta genes and in yeast the PP1 catalytic subunit is encoded by GLC7. However they recognize a common PP1 binding motif in their regulatory subunits which provide the substrate targeting specificity. The interaction is mainly through the hydrophobic patch of PP1 and the RVXF motif of the regulatory subunit. PP1 is involved in regulating diverse cellular functions including glycogen metabolism, muscle contraction, the exit from mitosis and the splicing of RNA.
ELMs: LIG_PP1
Description: PP1c lacks intrinsic substrate specificity. The RVXF motif is found in regulatory subunits that either bridge PP1 with the substrates or inhibit PP1. A gap of one residue is also tolerated between R and V. The RVXF motif may also be flanked by positively charged amino acids at the N-terminus and negatively charged amino acids at the C-terminus. Even though PP1 exists in many isoforms, the consensus sequences of the PP1 binding motif is probably the same in all eukaryotes. This motif is probably always found in natively disordered polypeptide segments. However, something to watch out for is that the conserved hydrophobic residues will tend to generate false positives in globular domains.
Pattern: ..[RK].{0,1}[VIL][^P][FW]. (Probability: 0.0008301)
Present in taxons: Eukaryota
PDB Structure: 1S70
<img src="/media/pdb.ico.png"/><a href="http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1S70" target="_blank">1S70</a>
Interaction Domain:

Metallophos (PF00149)
Calcineurin-like phosphoesterase
(Stochiometry: 1 : 1)

o See 20 Instances for LIG_PP1


o Abstract

Reversible protein serine/threonine phosphorylation is an important component of the intracellular signaling machinery. It regulates many of the process such as neurotransmission, muscle contraction, glycogen synthesis, T-cell activation, neuronal plasticity and cell proliferation (Aggen et.al., 2000). Protein serine/threonine phosphatases are divided into three structurally unrelated families. The PPM family comprises Mg2+-dependent enzymes, including protein phosphatase 2C (PP2C). The FCP family contains only one member, which is also Mg2+ dependent. All other protein serine/threonine phosphatases are classified in the PPP family, consisting of the subfamilies PP1, PP2A (including PP4 and PP6), PP2B, and PP5, all having a structurally related core and a similar catalytic mechanism (Ceulemans H and Bollen M, 2003).

In eukaryotes PP1 exists in a large number of isoforms. In humans PP1 is encoded by three highly related genes (PP1 alpha, PP1 beta/delta and PP1 gamma), and alternative splicing generates the gamma1 and gamma2 isoforms. While Saccharomyces cerevisiae is an exception, with only one PP1 gene (glc7), many eukaryotes have multiple PP1 genes - 8 in Arabidopsis thaliana, 4 in Drosophila melanogaster and a predicted 30 in Caenorhabditis elegans (Moorhead et.al., 2007). The function of all these isoforms are presently unclear.



The regulatory subunits recruit active PP1c to dephosphorylate phosphothreonine or phosphoserine residues in the target substrates. Three grooves (hydrophobic, C-terminal, and acidic) have been defined on the surface of PP1 (James et.al., 2001). The hydrophobic groove of PP1c interacts with the RVXF motif in the regulatory proteins. The RVXF peptide backbone binds by beta-augmentation within the hydrophobic patch. So far more than 90 regulatory protein of PP1 with this characterised motif are documented (Moorhead et.al., 2007). These mostly mediate substrate target selection but some are inhibitors of PP1 for example phospho-DARPP-32.

o 14 selected references:

o 14 GO-Terms:

o 20 Instances for LIG_PP1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
RB_HUMAN 872 878 SNPPKPLKKLRFDIEGSDEA true positive 3N5U
Homo sapiens (Human)
PP1R8_HUMAN 198 204 PKRKRKNSRVTFSEDDEIIN true positive --- Homo sapiens (Human)
MYPT1_CHICK 33 39 PVVKRKKTKVKFDDGAVFLA true positive 1S70
Gallus gallus (Chicken)
DCX_MOUSE 52 58 LSNEKKAKKVRFYRNGDRYF true positive --- Mus musculus (House mouse)
PPR1B_HUMAN 5 12 MDPKDRKKIQFSVPAPPSQL true positive --- Homo sapiens (Human)
PP1RA_HUMAN 395 402 LTRKGRKRKSVTWPEEGKLR true positive --- Homo sapiens (Human)
SCD5_YEAST 238 244 SSAKTGDQKVDFDSFASLLL true positive --- Saccharomyces cerevisiae (Baker"s yeast)
SCD5_YEAST 271 277 KNLNFKSKKVRFSEHITFQD true positive --- Saccharomyces cerevisiae (Baker"s yeast)
GAC1_YEAST 67 74 EIFCTSPEKNVRFAIELTTV true positive --- Saccharomyces cerevisiae (Baker"s yeast)
REG1_YEAST 462 469 KSNKPTKNRHIHFNDRVEQC true positive --- Saccharomyces cerevisiae (Baker"s yeast)
NEB2_RAT 446 452 EEDPAPSRKIHFSTAPIQVF true positive 3EGH
Rattus norvegicus (Norway rat)
NEB2_RAT 573 579 SVLRNTKGRVRFMIGRERPG true negative 3EGH
Rattus norvegicus (Norway rat)
PPR3A_HUMAN 61 67 DTPSSGTRRVSFADSFGFNL true positive --- Homo sapiens (Human)
MYPT1_HUMAN 33 39 PVVKRQKTKVKFDDGAVFLA true positive --- Homo sapiens (Human)
BRCA1_HUMAN 896 902 GSLKKQSPKVTFECEQKEEN true positive --- Homo sapiens (Human)
NEB1_RAT 455 461 EEEIPANRKIKFSCAPIKVF true positive --- Rattus norvegicus (Norway rat)
RB_HUMAN 871 878 GSNPPKPLKKLRFDIEGSDE true positive 3N5U
Homo sapiens (Human)
ICP34_HHV1F 190 196 PATPATPARVRFSPHVRVRH true positive --- Herpes simplex virus (type 1 / strain F)
AKAP1_HUMAN 151 158 LECPLSSPKGVLFSSKSAEV true positive --- Homo sapiens (Human)
NEK2_HUMAN 381 387 LPSSVIKKKVHFSGESKENI true positive --- Homo sapiens (Human)

Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)

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