The Eukaryote Linear Motif resource for Functional Sites in Proteins
 
 << TRG_ER_KDEL_1 <<  Menu  >> TRG_LysEnd_APsAcLL_1 >> 
 
Functional site class: ER export signals
Functional site description: Signals found in the cytoplasmic tail of cargo receptors and facilitating their ER to Golgi anterograde transport by binding to COPII.
ELMs: TRG_Golgi_diPhe_1
Description: The di Phe motif found in the cytoplasmic tail of all members of the p24/GP25 family of cargo receptors involved in vesicle trafficking. It is responsible for their binding to COP II, the coatomer driving the anterograde ER-to-Golgi transport. Importantly, the cytoplasmic domain of these proteins has been shown to mediate (1) the recruitment of ARF1 to Golgi membrane allowing subsequent coatomer recruitment (PMID:11726511) and (2) a conformational change and polymerisation of the coatomer, possibly driving the budding of vesicles at the CGN (PMID:9990005).
Pattern: Q.{6,6}FF.{6,7}$ (Probability: 0.0000001)
Present in taxons: Canis familiaris Cricetulus griseus Fungi/Metazoa group Homo sapiens Oryctolagus cuniculus Rattus norvegicus Saccharomyces cerevisiae Xenopus laevis
Interaction Domain:

WD40 (PF00400)
WD domain, G-beta repeat
(Stochiometry: 1 : 1)

o See 11 Instances for TRG_Golgi_diPhe_1


o Abstract

In eukaryotic cells the secretory pathway consists of series of compartments that modify, transport and sort secretory cargo. Coat protein complexes are responsible for vesicle formation during the transport events and recognition of signals exposed to those complexes insure sorting and targeting of proteins between the various compartments. Cargo transport molecules bear at their C-terminus (cytoplasmic) short motifs used to direct them to and or retain them in specific compartments. For example DXE motif facilitates ER export of post ER resident proteins and di Phenylalanine (diPhe) motif drives anterograde ER to Golgi transport of cargo receptors.
In order to recycle some organellar components and cargo selecting molecules while the secretory cargo advances the transport within the secretory pathway has to be bidirectional . Anterograde transport is catalysed by COPII coat protein complex and retrograde transport involves COPI complex. Some proteins bear determinants allowing them to undergo transport in both directions. In many instances the diPhe motif of some cargo receptors cycling between the ER and the Golgi apparatus coexists with a diLys motif : it has been proposed that diPhe triggers anterograde transport between ER and Golgi (binding to COPII) while diLysine (see Functional site di Lysine ER retrieving signal and ELM TRG_ER_diLysine_1) triggers return to the ER. The members of the p24 family are examples of diPhe bearing type I integral membrane proteins : they are involved in vesicle trafficking and reside at the cis Golgi network under steady state conditions. Their cytoplasmic tail mediates the recruitment of ARF1-GDP (ADP-ribosylation factor 1) to Golgi membranes (PMIDPMID:11726511), subsequently membrane bound ARF1-GTP triggers the recruitment of coatomer.

o 5 selected references:

o 13 GO-Terms:

o 11 Instances for TRG_Golgi_diPhe_1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
TMED9_HUMAN 221 235 AIGVWQMRHLKSFFEAKKLV true positive --- Homo sapiens (Human)
TMED2_CRIGR 182 196 AMTLGQIYYLKRFFEVRRVV true positive --- Cricetulus griseus (Chinese hamster)
TMED2_RAT 187 201 AMTLGQIYYLKRFFEVRRVV true positive --- Rattus norvegicus (Norway rat)
EMP24_YEAST 189 203 ANSLFQIYYLRRFFEVTSLV true positive --- Saccharomyces cerevisiae (Baker's yeast)
TMEDA_RABIT 204 219 LATWQVFYLRRFFKAKKLIE true positive --- Oryctolagus cuniculus (Rabbit)
TMD11_CANFA 201 215 AIGIFQMKSLKNFFIAKKLV true positive --- Canis familiaris (Dog)
TMEDA_HUMAN 204 219 LATWQVFYLRRFFKAKKLIE true positive --- Homo sapiens (Human)
Q91841_XENLA 190 205 LATWQVCYLRHFFKAKKLIE true positive --- Xenopus laevis (African clawed frog)
ERP6_YEAST 202 216 IICVWQMKSLRSFFVKQKVL true positive --- Saccharomyces cerevisiae (Baker's yeast)
TMED2_HUMAN 187 201 AMTLGQIYYLKRFFEVRRVV true positive --- Homo sapiens (Human)
ERP5_YEAST 198 212 GTCAFQLRYLKNFFVKQKVV true positive --- Saccharomyces cerevisiae (Baker's yeast)
Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)
feedback@elm.eu.org