LIG_Clathr_ClatBox_1
ELM server details
ELM
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Functional site class:
Clathrin box
Functional site description:
Clathrin boxes are found on cargo adaptor proteins. They interact with the N-terminal beta-propeller structure of Clathrin heavy chain. Beside the "classical" motif, some variants have been described for various types of adaptor proteins. The same protein can bear several subtypes of Clathrin boxes.
ELM(s): LIG_Clathr_ClatBox_2, LIG_Clathr_ClatBox_1
LIG_Clathr_ClatBox_1 description: The classical clathrin box is a motif found on cargo adaptor proteins, in general near their C-terminus. This motif is sufficient for binding to the amino terminal beta propeller structure of Clathrin heavy chain. Variants of this "classical" consensus exist (see LIG_Clathr_ClatBox_2 for example) sometimes they coexist on the same protein.
Pattern: L[IVLMF].[IVLMF][DE]
Present in taxon(s): Homo sapiens  Eukaryota  Saccharomyces cerevisiae  Mus musculus  Rattus norvegicus  
Not represented in taxon(s):

o See instances for LIG_Clathr_ClatBox_1


o Abstract

Clathrin is the main component of the coat that decorates the cytosolic face of carrier vesicles mediating protein and lipid transport in the endocytic and late secretory pathways. In vivo the multimerisation of the clathrin heterohexamer (known as triskelion) and the clathrin-mediated vesicular trafficking are regulated through a complex network of interactions involving clathrin and a number of accessory proteins.
Clathrin boxes are 5-residue-motifs found on cargo adaptor proteins, mostly near their C-terminus or central region. They are found in a large variety of accessory proteins involved in endocytosis and vesicular trafficking (specific adaptors like beta-arrestin and more general adaptor proteins like AP complexes). Unfolded flexible regions or hinges can display multiple copies of the motif, sometime belonging to different subtypes. This organisation is believed to ensure a complex, ajustable network of “weak” cooperative interactions, with the affinity between members defined by the number of motifs they possess. Extended peptides could also promote clathrin assembly by bridging the heavy chains of clathrin molecules engaged in an assembled coat. Clathin box motifs interact with the N-terminus of Clathrin heavy chain, with the so called beta-propeller structure.

o Selected references

Dell'Angelica EC
Clathrin-binding proteins: got a motif? Join the network!
Trends Cell Biol 2001 Aug;11(8) : 315-8.
PMID: 11489622

Goodman OB Jr, Krupnick JG, Gurevich VV, Benovic JL, Keen JH
Arrestin/clathrin interaction. Localization of the arrestin binding locus to the clathrin terminal domain.
J Biol Chem 1997 Jun 6;272(23) : 15017-22.
PMID: 9169477

Krupnick JG, Goodman OB Jr, Keen JH, Benovic JL
Arrestin/clathrin interaction. Localization of the clathrin binding domain of nonvisual arrestins to the carboxy terminus.
J Biol Chem 1997 Jun 6;272(23) : 15011-6.
PMID: 9169476

Lafer EM
Clathrin-protein interactions.
Traffic 2002 Aug;3(8) : 513-20.
PMID: 12121414

Puertollano R, Randazzo PA, Presley JF, Hartnell LM, Bonifacino JS
The GGAs promote ARF-dependent recruitment of clathrin to the TGN.
Cell 2001 Apr 6;105(1) : 93-102.
PMID: 11301005

Ramjaun AR, McPherson PS
Multiple amphiphysin II splice variants display differential clathrin binding: identification of two distinct clathrin-binding sites.
J Neurochem 1998 Jun;70(6) : 2369-76.
PMID: 9603201

o This ELM has been assigned the following Gene Ontology (GO) terms for biological process, cellular component and molecular function.

Biological Process
  endocytosis
  receptor mediated endocytosis
Cellular Component
  cytosol
  Golgi apparatus
  cytoskeleton
  clathrin-coated endocytic vesicle
  Golgi trans-face
Molecular Function
  clathrin binding

 

o Instances for LIG_Clathr_ClatBox_1

SequencePositionSubsequence
(Click for evidence information)
PDBGene NameProtein DescriptionOrganism
EPN1_RAT 480-484 GPNAALVDLDSLVSRP - Name=Epn1; Epsin-1 (EPS-15-interacting protein 1). Rattus norvegicus (Rat).
SMAP1_MOUSE 192-196 EPTIDLLGLDGPAEAP - Name=Smap1; Stromal membrane-associated protein 1. Mus musculus (Mouse).
AP180_RAT 178-182 GQIDALLEFDVHPNEL - Name=Snap91; Clathrin coat assembly protein AP180 (Clathrin coat-associated protein AP180) (91 kDa synaptosomal-associated protein). Rattus norvegicus (Rat).
AP3B1_HUMAN 818-822 TKDVSLLDLDDFNPVS 1C9I
Name=AP3B1; Synonyms=ADTB3A; AP-3 complex subunit beta-1 (Adapter-related protein complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain). Homo sapiens (Human).
ARRB2_BOVIN 384-388 PVDTNLIEFETNYATD 1C9L
Name=ARRB2; Beta-arrestin-2 (Arrestin beta 2) (Arrestin-3). Bos taurus (Bovine).
HIP1_HUMAN 325-329 LEKDDLMDMDASQQNL - Name=HIP1; Huntingtin-interacting protein 1 (HIP-I). Homo sapiens (Human).
AP2B1_BOVIN 631-635 DLLGDLLNLDLGPPVN - Name=AP2B1; Synonyms=CLAPB1; AP-2 complex subunit beta-1 (Adapter-related protein complex 2 beta-1 subunit) (Beta2-adaptin) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B). Bos taurus (Bovine).
AP1B1_HUMAN 632-636 DLLGDLLNLDLGPPVS - Name=AP1B1; Synonyms=ADTB1, BAM22, CLAPB2; AP-1 complex subunit beta-1 (Adapter-related protein complex 1 subunit beta-1) (Beta1-adaptin) (Beta-adaptin 1) (Adaptor protein complex AP-1 subunit beta-1) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large chain). Homo sapiens (Human).
ARRB1_BOVIN 376-380 PVDTNLIELDTNDDDI - Name=ARRB1; Beta-arrestin-1 (Arrestin beta 1). Bos taurus (Bovine).
AMPH_HUMAN 118-122 LVDGSLLTLDTYLGQF - Name=AMPH; Synonyms=AMPH1; Amphiphysin. Homo sapiens (Human).
AMPH_HUMAN 351-355 KKEETLLDLDFDPFKP - Name=AMPH; Synonyms=AMPH1; Amphiphysin. Homo sapiens (Human).
AUXI_BOVIN 496-500 PEDVDLLGLEGSAVSK - Name=DNAJC6; Putative tyrosine-protein phosphatase auxilin (EC 3.1.3.48) (DnaJ homolog subfamily C member 6). Bos taurus (Bovine).
AP3B2_HUMAN 808-812 TKEISLLDLEDFTPPS - Name=AP3B2; AP-3 complex subunit beta-2 (Adapter-related protein complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor protein complex AP-3 beta-2 subunit) (AP-3 complex beta-2 subunit) (Clathrin assembly protein complex 3 beta-2 large chain) (Neuron-specific vesicle coat protein beta-NAP). Homo sapiens (Human).
ARRB2_MOUSE 374-378 PVDTNLIEFDTNYATD - Name=Arrb2; Beta-arrestin-2 (Arrestin beta 2). Mus musculus (Mouse).
GGA2_HUMAN 349-353 MKTCPLIDLEVDNGPA - Name=GGA2; Synonyms=KIAA1080; ADP-ribosylation factor-binding protein GGA2 (Golgi-localized, gamma ear-containing, ARF-binding protein 2) (Gamma-adaptin-related protein 2) (VHS domain and ear domain of gamma-adaptin) (Vear). Homo sapiens (Human).
BIN1_HUMAN 123-127 LVDQALLTMDTYLGQF - Name=BIN1; Synonyms=AMPHL; Myc box-dependent-interacting protein 1 (Bridging integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc- interacting protein 1). Homo sapiens (Human).
BIN1_HUMAN 390-394 SEQASLLDLDFDPLPP - Name=BIN1; Synonyms=AMPHL; Myc box-dependent-interacting protein 1 (Bridging integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc- interacting protein 1). Homo sapiens (Human).