| LIG_Clathr_ClatBox_1 |
|
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 |
| Functional site
class: |
Clathrin box |
Functional site description: |
Clathrin boxes are found on cargo adaptor proteins. They interact with the N-terminal beta-propeller structure of Clathrin heavy chain. Beside the "classical" motif, some variants have been described for various types of adaptor proteins. The same protein can bear several subtypes of Clathrin boxes. |
| ELM(s): |
LIG_Clathr_ClatBox_2, LIG_Clathr_ClatBox_1 |
| LIG_Clathr_ClatBox_1 description: |
The classical clathrin box is a motif found on cargo adaptor proteins, in general near their C-terminus. This motif is sufficient for binding to the amino terminal beta propeller structure of Clathrin heavy chain. Variants of this "classical" consensus exist (see LIG_Clathr_ClatBox_2 for example) sometimes they coexist on the same protein. |
| Pattern: |
L[IVLMF].[IVLMF][DE] |
| Present in taxon(s): |
Homo sapiens Eukaryota Saccharomyces cerevisiae Mus musculus Rattus norvegicus |
| Not represented in taxon(s): |
|
See instances for LIG_Clathr_ClatBox_1
Abstract
Clathrin is the main component of the coat that decorates the cytosolic face of carrier vesicles mediating protein and lipid transport in the endocytic and late secretory pathways. In vivo the multimerisation of the clathrin heterohexamer (known as triskelion) and the clathrin-mediated vesicular trafficking are regulated through a complex network of interactions involving clathrin and a number of accessory proteins.
Clathrin boxes are 5-residue-motifs found on cargo adaptor proteins, mostly near their C-terminus or central region. They are found in a large variety of accessory proteins involved in endocytosis and vesicular trafficking (specific adaptors like beta-arrestin and more general adaptor proteins like AP complexes). Unfolded flexible regions or hinges can display multiple copies of the motif, sometime belonging to different subtypes. This organisation is believed to ensure a complex, ajustable network of “weak” cooperative interactions, with the affinity between members defined by the number of motifs they possess. Extended peptides could also promote clathrin assembly by bridging the heavy chains of clathrin molecules engaged in an assembled coat. Clathin box motifs interact with the N-terminus of Clathrin heavy chain, with the so called beta-propeller structure.
Selected references
| Dell'Angelica EC | | Clathrin-binding proteins: got a motif? Join the network! | | Trends Cell Biol 2001 Aug;11(8) : 315-8. | | PMID: 11489622 |
| Lafer EM | | Clathrin-protein interactions. | | Traffic 2002 Aug;3(8) : 513-20. | | PMID: 12121414 |
| Ramjaun AR, McPherson PS | | Multiple amphiphysin II splice variants display differential clathrin
binding: identification of two distinct clathrin-binding sites. | | J Neurochem 1998 Jun;70(6) : 2369-76. | | PMID: 9603201 |
This ELM has been assigned the following Gene Ontology (GO) terms for biological process, cellular component and molecular function.
|
Biological Process |
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endocytosis
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receptor mediated endocytosis
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Cellular Component |
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cytosol |
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Golgi apparatus |
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cytoskeleton |
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clathrin-coated endocytic vesicle |
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Golgi trans-face |
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Molecular Function |
|
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clathrin binding |
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| Sequence | Position | Subsequence (Click for evidence information) | PDB | Gene Name | Protein Description | Organism |
| EPN1_RAT |
480-484 |
GPNAALVDLDSLVSRP |
- |
Name=Epn1; |
Epsin-1 (EPS-15-interacting protein 1). |
Rattus norvegicus (Rat). |
| SMAP1_MOUSE |
192-196 |
EPTIDLLGLDGPAEAP |
- |
Name=Smap1; |
Stromal membrane-associated protein 1. |
Mus musculus (Mouse). |
| AP180_RAT |
178-182 |
GQIDALLEFDVHPNEL |
- |
Name=Snap91; |
Clathrin coat assembly protein AP180 (Clathrin coat-associated protein
AP180) (91 kDa synaptosomal-associated protein). |
Rattus norvegicus (Rat). |
| AP3B1_HUMAN |
818-822 |
TKDVSLLDLDDFNPVS |
1C9I
|
Name=AP3B1; Synonyms=ADTB3A; |
AP-3 complex subunit beta-1 (Adapter-related protein complex 3 beta-1
subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1
subunit) (Clathrin assembly protein complex 3 beta-1 large chain). |
Homo sapiens (Human). |
| ARRB2_BOVIN |
384-388 |
PVDTNLIEFETNYATD |
1C9L
|
Name=ARRB2; |
Beta-arrestin-2 (Arrestin beta 2) (Arrestin-3). |
Bos taurus (Bovine). |
| HIP1_HUMAN |
325-329 |
LEKDDLMDMDASQQNL |
- |
Name=HIP1; |
Huntingtin-interacting protein 1 (HIP-I). |
Homo sapiens (Human). |
| AP2B1_BOVIN |
631-635 |
DLLGDLLNLDLGPPVN |
- |
Name=AP2B1; Synonyms=CLAPB1; |
AP-2 complex subunit beta-1 (Adapter-related protein complex 2 beta-1
subunit) (Beta2-adaptin) (Beta-adaptin) (Plasma membrane adaptor
HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2
beta large chain) (AP105B). |
Bos taurus (Bovine). |
| AP1B1_HUMAN |
632-636 |
DLLGDLLNLDLGPPVS |
- |
Name=AP1B1; Synonyms=ADTB1, BAM22, CLAPB2; |
AP-1 complex subunit beta-1 (Adapter-related protein complex 1 subunit
beta-1) (Beta1-adaptin) (Beta-adaptin 1) (Adaptor protein complex AP-1
subunit beta-1) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin
assembly protein complex 1 beta large chain). |
Homo sapiens (Human). |
| ARRB1_BOVIN |
376-380 |
PVDTNLIELDTNDDDI |
- |
Name=ARRB1; |
Beta-arrestin-1 (Arrestin beta 1). |
Bos taurus (Bovine). |
| AMPH_HUMAN |
118-122 |
LVDGSLLTLDTYLGQF |
- |
Name=AMPH; Synonyms=AMPH1; |
Amphiphysin. |
Homo sapiens (Human). |
| AMPH_HUMAN |
351-355 |
KKEETLLDLDFDPFKP |
- |
Name=AMPH; Synonyms=AMPH1; |
Amphiphysin. |
Homo sapiens (Human). |
| AUXI_BOVIN |
496-500 |
PEDVDLLGLEGSAVSK |
- |
Name=DNAJC6; |
Putative tyrosine-protein phosphatase auxilin (EC 3.1.3.48) (DnaJ
homolog subfamily C member 6). |
Bos taurus (Bovine). |
| AP3B2_HUMAN |
808-812 |
TKEISLLDLEDFTPPS |
- |
Name=AP3B2; |
AP-3 complex subunit beta-2 (Adapter-related protein complex 3 beta-2
subunit) (Beta3B-adaptin) (Adaptor protein complex AP-3 beta-2
subunit) (AP-3 complex beta-2 subunit) (Clathrin assembly protein
complex 3 beta-2 large chain) (Neuron-specific vesicle coat protein
beta-NAP). |
Homo sapiens (Human). |
| ARRB2_MOUSE |
374-378 |
PVDTNLIEFDTNYATD |
- |
Name=Arrb2; |
Beta-arrestin-2 (Arrestin beta 2). |
Mus musculus (Mouse). |
| GGA2_HUMAN |
349-353 |
MKTCPLIDLEVDNGPA |
- |
Name=GGA2; Synonyms=KIAA1080; |
ADP-ribosylation factor-binding protein GGA2 (Golgi-localized, gamma
ear-containing, ARF-binding protein 2) (Gamma-adaptin-related protein
2) (VHS domain and ear domain of gamma-adaptin) (Vear). |
Homo sapiens (Human). |
| BIN1_HUMAN |
123-127 |
LVDQALLTMDTYLGQF |
- |
Name=BIN1; Synonyms=AMPHL; |
Myc box-dependent-interacting protein 1 (Bridging integrator 1)
(Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-
interacting protein 1). |
Homo sapiens (Human). |
| BIN1_HUMAN |
390-394 |
SEQASLLDLDFDPLPP |
- |
Name=BIN1; Synonyms=AMPHL; |
Myc box-dependent-interacting protein 1 (Bridging integrator 1)
(Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-
interacting protein 1). |
Homo sapiens (Human). |