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Functional site class: Clathrin box
Functional site description: Clathrin boxes are found on cargo adaptor proteins. They interact with the N-terminal beta-propeller structure of Clathrin heavy chain. Beside the "classical" motif, some variants have been described for various types of adaptor proteins. The same protein can bear several subtypes of Clathrin boxes.
ELMs: LIG_Clathr_ClatBox_1 LIG_Clathr_ClatBox_2
Description: The classical clathrin box is a motif found on cargo adaptor proteins, in general near their C-terminus. This motif is sufficient for binding to the amino terminal beta propeller structure of Clathrin heavy chain. Variants of this "classical" consensus exist (see LIG_Clathr_ClatBox_2 for example) sometimes they coexist on the same protein.
Pattern: L[IVLMF].[IVLMF][DE] (Probability: 0.0003406)
Present in taxons: Eukaryota Homo sapiens Mus musculus Rattus norvegicus Saccharomyces cerevisiae
PDB Structure: 1C9I
PDB:1C9I
Interaction Domain:

Clathrin_propel (PF01394)
Clathrin propeller repeat
(Stochiometry: 1 : 1)

o See 18 Instances for LIG_Clathr_ClatBox_1


o Abstract

Clathrin is the main component of the coat that decorates the cytosolic face of carrier vesicles mediating protein and lipid transport in the endocytic and late secretory pathways. In vivo the multimerisation of the clathrin heterohexamer (known as triskelion) and the clathrin-mediated vesicular trafficking are regulated through a complex network of interactions involving clathrin and a number of accessory proteins.
Clathrin boxes are 5-residue-motifs found on cargo adaptor proteins, mostly near their C-terminus or central region. They are found in a large variety of accessory proteins involved in endocytosis and vesicular trafficking (specific adaptors like beta-arrestin and more general adaptor proteins like AP complexes). Unfolded flexible regions or hinges can display multiple copies of the motif, sometime belonging to different subtypes. This organisation is believed to ensure a complex, ajustable network of "weak" cooperative interactions, with the affinity between members defined by the number of motifs they possess. Extended peptides could also promote clathrin assembly by bridging the heavy chains of clathrin molecules engaged in an assembled coat. Clathin box motifs interact with the N-terminus of Clathrin heavy chain, with the so called beta-propeller structure.

o 6 selected references:

o 8 GO-Terms:

o 18 Instances for LIG_Clathr_ClatBox_1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
SMAP1_MOUSE 192 196 AAEPTIDLLGLDGPAEAPVT true positive --- Mus musculus (House mouse)
AP1B1_HUMAN 632 636 QGDLLGDLLNLDLGPPVSGP true positive --- Homo sapiens (Human)
ARRB1_BOVIN 376 380 ETPVDTNLIELDTNDDDIVF true positive --- Bos taurus (Cow)
AUXI_BOVIN 496 500 APPEDVDLLGLEGSAVSKNF true positive --- Bos taurus (Cow)
BIN1_HUMAN 390 394 PFSEQASLLDLDFDPLPPVT true positive --- Homo sapiens (Human)
AMPH_HUMAN 351 355 EVKKEETLLDLDFDPFKPEV true positive --- Homo sapiens (Human)
AP3B2_HUMAN 808 812 PATKEISLLDLEDFTPPSVQ true positive --- Homo sapiens (Human)
ARRB2_MOUSE 374 378 DVPVDTNLIEFDTNYATDDD true positive --- Mus musculus (House mouse)
EPN1_RAT 480 484 FLGPNAALVDLDSLVSRPGP true positive --- Rattus norvegicus (Norway rat)
AMPH_HUMAN 118 122 QKLVDGSLLTLDTYLGQFPD false positive --- Homo sapiens (Human)
BIN1_HUMAN 123 127 QKLVDQALLTMDTYLGQFPD false positive --- Homo sapiens (Human)
AP3B1_HUMAN 818 822 PLTKDVSLLDLDDFNPVSTP true positive 1C9I
Homo sapiens (Human)
ARRB2_BOVIN 384 388 DAPVDTNLIEFETNYATDDD true positive 1C9L
Bos taurus (Cow)
AP180_RAT 178 182 LQGQIDALLEFDVHPNELTN false positive --- Rattus norvegicus (Norway rat)
PICA_DROME 192 196 LQAQLDALLEFDCQSNDLSN false positive 1HX8
Drosophila melanogaster (Fruit fly)
HIP1_HUMAN 332 336 PVLEKDDLMDMDASQQNLFD true positive --- Homo sapiens (Human)
AP2B1_BOVIN 631 635 QGDLLGDLLNLDLGPPVNVP true positive --- Bos taurus (Cow)
GGA2_HUMAN 349 353 GCMKTCPLIDLEVDNGPAQM true positive --- Homo sapiens (Human)
Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)
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