The Eukaryote Linear Motif resource for Functional Sites in Proteins
Accession:
Functional site class:
di Lysine ER retrieving signal
Functional site description:
Located at the C-terminus of ER type I membrane proteins (cytoplasmic in this topology), interacts with members of the coatomer (COPI).
ELM Description:
ER retention and retrieving signal found at the C-terminus of type I ER membrane proteins (cytoplasmic in this topology). Di-Lysine signal is responsible for COPI-mediated retrieval from post-ER compartments.
Pattern: K.{0,1}K.{2,3}$
Pattern Probability: 0.0000268
Present in taxon: Eukaryota
Interaction Domain:
WD40 (PF00400) WD domain, G-beta repeat (Stochiometry: 1 : 1)
o See 14 Instances for TRG_ER_diLys_1
o Abstract
The di-Lysine motif is found in type I membrane proteins of the ER and interacts directly with COPI (gamma-COP), which then drives the recycling of type I membrane proteins to the ER. Experimental data suggest that di-Lysine results in an enrichment in the intermediate compartment and cis-Golgi, while KDEL (TRG_ER_KDEL_1) dictates residency in the ER.
The di-Lysine motif has to be exposed from the membrane lipids in order to function: a minimum of 5 amino acid residues is probably required between the first charged residue of the cytoplasmic tail and the first Lysine of the motif. The di-lysine motif appears to be conserved across eukaryotes, and mutagenesis studies show remarkable conservation of the functional motif between yeast and human. Some substitutions of Lysine by Arginine are permitted. Although the di-Lysine motif is the minimum requirement for targeting, the sequences flanking the Lysines can influence retention efficiency.
STERIC MASKING: the list of proteins that possess a di-Lysine motif contains several proteins known to be localized in their mature folded state at the cell surface. An example is the mouse T-cell receptor beta-chain or high affinity IgE receptor alpha-chain. An explanation was provided by the observation that the motif on the alpha-chain can be sterically masked by polypeptides from the gamma-chain of the receptor. As a result the di-Lysine motif became non functional after the alpha-chain correctly assemble with the gamma-chain thereby ensuring that only functional complexes exit the ER.
o 6 selected references:

o 17 GO-Terms:

o 14 Instances for TRG_ER_diLys_1
(click table headers for sorting; Notes column: =Number of Switches, =Number of Interactions)
Protein NameGene NameStartEndSubsequenceLogic#Ev.OrganismNotes
S35A2_HUMAN SLC35A2 392 396 RGDLITEPFLPKLLTKVKGS TP 2 Homo sapiens (Human)
1 
SPIKE_IBVB S 1159 1162 YYTTFDNDVVTEQYRPKKSV TP 2 Avian infectious bronchitis virus (strain Beaudette)
NS7A_CVHSA 7a 118 122 LIVAALVFLILCFTIKRKTE TP 2 SARS coronavirus
E3GL_ADE02 156 159 TLLYLKYKSRRSFIDEKKMP TP 4 Human adenovirus 2
TMED9_HUMAN TMED9 232 235 AIGVWQMRHLKSFFEAKKLV TP 7 Homo sapiens (Human)
Q91841_XENLA Translocon-as 201 205 LATWQVCYLRHFFKAKKLIE TP 1 Xenopus laevis (African clawed frog)
OSTB_YEAST WBP1 427 430 VSFVTTSSVGKKLETFKKTN TP 6 Saccharomyces cerevisiae (Baker"s yeast)
EMP47_YEAST EMP47 441 445 LVMAYYTFRIRQEIIKTKLL TP 6 Saccharomyces cerevisiae (Baker"s yeast)
FCERA_RAT Fcer1a 242 245 HKQFESILKIQKTGKGKKKG TP 1 Rattus norvegicus (Norway rat)
HMDH_HUMAN HMGCR 885 888 HNRSKINLQDLQGACTKKTA TP 4 Homo sapiens (Human)
UD11_HUMAN UGT1A1 529 533 YRKCLGKKGRVKKAHKSKTH TP 4 Homo sapiens (Human)
LMAN1_HUMAN LMAN1 507 510 LFIGYIMYRSQQEAAAKKFF TP 3 Homo sapiens (Human)
Q40235_SOLPI Cf-9 860 863 MDLKLEHIITTKMKKHKKRY TP 7 Solanum pimpinellifolium
TMEDA_HUMAN TMED10 215 219 LATWQVFYLRRFFKAKKLIE TP 7 Homo sapiens (Human)
Please cite: The Eukaryotic Linear Motif Resource ELM: 10 Years and Counting (PMID:24214962)

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