The Eukaryote Linear Motif resource for Functional Sites in Proteins
 
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Functional site class: di Lysine ER retrieving signal
Functional site description: Located at the C-terminus of ER type I membrane proteins (cytoplasmic in this topology), interacts with members of the coatomer (COP I).
ELMs: TRG_ER_diLys_1
Description: ER retention and retrieving signal found at the C-terminus of type I ER membrane proteins (cytoplasmic in this topology). Di-Lysine signal is reponsible for COP-I mediated retrieval from post ER compartments.
Pattern: K.{0,1}K.{2,3}$ (Probability: 0.0000268)
Present in taxons: Eukaryota
Interaction Domain:

WD40 (PF00400)
WD domain, G-beta repeat
(Stochiometry: 1 : 1)

o See 13 Instances for TRG_ER_diLys_1


o Abstract

The di-Lysine motif is beared by type I membrane proteins of the ER,
it interacts directly with COPI (gamma-COP), which then drives the recycling of type I membrane proteins to the ER. Experimental evidences suggest that di-Lysine results in an enrichment in the intermediate compartment and cis-Golgi while KDEL dictates residency in the ER.
The di-Lysine motif has to be exposed from the membrane lipids in order to function : a minimum of 5 aa residues is probably required between the first charged residue of the cytoplasmic tail and the first Lysine of the motif.
The di-lysine motif appears to be conserved across eukaryotes, and mutagenesis studies show remarkable conservation of the functional motif between yeast and humans.
Some substitutions of Lysine by Arginine are permitted. Although the di-Lysine motif is the minimum requirement for targeting, the sequences flanking the Lysines can influence retention efficiency.
STERIC MASKING: the list of proteins that possess a di-Lysine motif contains several proteins known to be localized in their mature folded state at the cell surface. An example is the mouse T-cell receptor beta-chain or high affinity IgE receptor alpha-chain. An explanation was provided by the observation that the motif on the alpha-chain can be sterically masked by polypeptides from the gamma-chain of the receptor. As a result the di-Lysine motif became non functional after the alpha-chain correctly assemble with the gamma-chain thereby ensuring that only functional complexes exit the ER.

o 6 selected references:

o 17 GO-Terms:

o 13 Instances for TRG_ER_diLys_1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
SPIKE_IBVB 1159 1162 YYTTFDNDVVTEQYRPKKSV true positive --- Avian infectious bronchitis virus (strain Beaudette)
NS7A_CVHSA 118 122 LIVAALVFLILCFTIKRKTE true positive --- SARS coronavirus
E3GL_ADE02 156 159 TLLYLKYKSRRSFIDEKKMP true positive --- Human adenovirus type 2
TMED9_HUMAN 232 235 AIGVWQMRHLKSFFEAKKLV true positive --- Homo sapiens (Human)
Q91841_XENLA 201 205 LATWQVCYLRHFFKAKKLIE true positive --- Xenopus laevis (African clawed frog)
OSTB_YEAST 427 430 VSFVTTSSVGKKLETFKKTN true positive --- Saccharomyces cerevisiae (Baker's yeast)
EMP47_YEAST 441 445 LVMAYYTFRIRQEIIKTKLL true positive --- Saccharomyces cerevisiae (Baker's yeast)
FCERA_RAT 242 245 HKQFESILKIQKTGKGKKKG true positive --- Rattus norvegicus (Norway rat)
HMDH_HUMAN 885 888 HNRSKINLQDLQGACTKKTA true positive --- Homo sapiens (Human)
UD11_HUMAN 529 533 YRKCLGKKGRVKKAHKSKTH true positive --- Homo sapiens (Human)
LMAN1_HUMAN 507 510 LFIGYIMYRSQQEAAAKKFF true positive --- Homo sapiens (Human)
Q40235_SOLPI 860 863 MDLKLEHIITTKMKKHKKRY true positive --- Lycopersicon pimpinellifolium (Currant tomato)
TMEDA_HUMAN 215 219 LATWQVFYLRRFFKAKKLIE true positive --- Homo sapiens (Human)
Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)
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