The Eukaryote Linear Motif resource for Functional Sites in Proteins
 
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Functional site class: Immunoreceptor tyrosine-based motif
Functional site description: In the cytoplasmatic region of immunoreceptors there are motifs that are critical for the activation and termination of signal transduction pathways.
ELMs: MOD_TYR_ITAM MOD_TYR_ITIM MOD_TYR_ITSM
Description: ITAM (immunoreceptor tyrosine-based activatory motif). ITAM consists of partially conserved short sequence of amino acid found in the cytoplasmatic tail of antigen and Fc receptors.
Pattern: [DEN]..(Y)..[LI].{6,12}(Y)..[LI] (Probability: 0.0000024)
Present in taxons: Vertebrata
Interaction Domain:

SH2 (PF00017)
SH2 domain
(Stochiometry: 2 : 1)

o See 7 Instances for MOD_TYR_ITAM


o Abstract

Antigen recognition and communication among cells (T, B and natural killer) of the immune system are regulated at the level of cell-surface antigen and transmembrane receptors. The extracellular regions of these receptors provide the immune specificity, whereas the intracellular region interacts with cytoplasmatic signaling molecules that are critical for the activation and termination of signal transduction pathways. The initial signaling events following the engagement of antigen receptors are regulated by the phosphorylation of characteristic signaling motifs that coordinate the activity of protein tyrosine kinases (PTKs) and protein tyrosine phosphatases (PTPases) and, in such a way, regulate the activation or inhibition of the intracellular response. Some receptors like CD154, CD28, CD3 transmit mainly positive co-stimulatory signals, whereas others - such as CTLA-4, killer inhibitory receptors (KIRs) or leukocyte immunoglobulin-like receptors (LIRs) - function principally as inhibitory receptors.

In addition, a group of dual-function receptors - such as the CD150 subfamily within the CD2 family - can act as either positive or negative regulators.

o 4 selected references:

o 2 GO-Terms:

o 7 Instances for MOD_TYR_ITAM
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
CD3E_HUMAN 185 202 PNPDYEPIRKGQRDLYSGLN true positive 1A81
Homo sapiens (Human)
CD3Z_HUMAN 69 86 QNQLYNELNLGRREEYDVLD true positive --- Homo sapiens (Human)
CD79A_HUMAN 185 202 DENLYEGLNLDDCSMYEDIS true positive --- Homo sapiens (Human)
CD79B_HUMAN 193 210 EDHTYEGLDIDQTATYEDIV true positive --- Homo sapiens (Human)
CD3D_HUMAN 146 163 NDQVYQPLRDRDDAQYSHLG true positive --- Homo sapiens (Human)
CD79B_MOUSE 192 209 EDHTYEGLNIDQTATYEDIV true positive --- Mus musculus (House mouse)
FCERG_HUMAN 62 79 SDGVYTGLSTRNQETYETLK true positive --- Homo sapiens (Human)

Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)

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