DOC_WD40_RPTOR_TOS_1
Accession: | |
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Functional site class: | Raptor interacting motif |
Functional site description: | At least one (but perhaps more) motifs interact with raptor as part of TOR pathway function. TOR is a kinase that regulates translation in a pathway with broad effects on many other cellular processes. The best known raptor-binding motif is TOS (the TOR signalling motif). |
ELM Description: | The TOS motif is found in substrates of the mTOR kinase. TOS interacts with the WD40-containing adaptor protein Raptor that is required to bring TOR together with its substrates. This motif expression is derived from the conservation observed in the 4E-BP translation initiation factors and the ribosomal s6-beta kinases and shows a strong beta amphipathicity. The motif alternates between hydrophobic and negatively charged residues. Although the structure of a TOS-Raptor complex is not yet known, the conservation might imply that the motif is bound in a sandwiched pocket. The terminal charged moiety can be either the carboxy-terminus (4E-BP1,2,3) or an amino acid (S6-beta kinase). TOS motifs reported in Hif1-alpha, Pld2 and AKTS1 do not match the motif expression in the ELM resource. The TOS motif is clearly not present in many proteins but the NUMB and NUMBL proteins do contain plausible candidates that might be worth investigating. The TOS motif as described here is found in Metazoa, slime mould and one basidiomycete, but not in other Fungi. If the phylogenetic distribution is larger, then the TOS motif will have diverged indifferent lineages. |
Pattern: | F[EDQS][MILV][ED][MILV]((.{0,1}[ED])|($)) |
Pattern Probability: | 0.0000207 |
Present in taxon: | Eukaryota |
Interaction Domain: |
WD40 (PF00400)
WD domain, G-beta repeat
(Stochiometry: 1 : 1)
|
Abstract |
The mammalian target of rapamycin mTOR, also known as FRAP, is a member of the PIK-related superfamily of protein serine/theronine kinases that was first identified in Saccharomyces cerevisiae (Oshiro,2007). The TOR pathway is an emerging target for the treatment of cancer, diabetes and obesity. TOR controls protein synthesis through a stunning number of downstream targets. Some of the targets are phosphorylated directly by TOR, but many of them are phosphorylated indirectly. TOR participates in at least two distinct multiprotein complexes TORC1 and TORC2. These complexes play important role in the regulation of cell growth, cell proliferation, cell motility, cell survival, protein synthesis, and transcription (Beugnet,2003). Two short motifs have been reported in the targets of TOR, the TOS motif (TOR signalling motif) and the RAIP motif. However, the RAIP motif is not characterised well enough to be included in ELM. In mammals mTOR, (mammalian TOR), regulates protein synthesis through the phosphorylation and inactivation of the repressor of mRNA translation, eukaryotic initiation factor 4E-binding protein (4E-BP1), and through the phosphorylation and activation of S6 kinase (S6K1). mTOR exists in two distinct complexes within cells: one (mTORC1) that contains mTOR, mLst8 and raptor and another (mTORC2) containing mTOR, mLst8, mSin1 and rictor (Schalm,2002). In order to phosphorylate its substrates in the TORC1 complex, mTOR needs an adaptor protein (raptor) that binds to S6K1 and 4E-BP1 (16824195). The interaction of raptor with S6K1 and 4E-BP1 is mediated by the TOS motif that is present in the N-terminus of S6-beta kinases and C-terminus of 4E-BP1. The TOS motif is currently only known from metazoan organisms. However, the TORC1 complex and highly conserved raptor orthologues are present in both Saccharomyces cerevisiae (Kog1) and Schizosaccharomyces pombe (Mip1). It is possible that the TOS motif exists in other Eukaryotic lineages but diverges from the metazoan motif pattern and so needs rediscovery. |
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Caspase cleavage of initiation factor 4E-binding protein 1 yields a
dominant inhibitor of cap-dependent translation and reveals a novel
regulatory motif.
Tee AR, Proud CG
Mol Cell Biol 2002 Mar; 22 (6), 1674-83
PMID: 11865047
-
Identification of a conserved motif required for mTOR signaling.
Schalm SS, Blenis J
Curr Biol 2002 Apr 16; 12 (8), 632-9
PMID: 11967149
-
Two motifs in the translational repressor PHAS-I required for efficient
phosphorylation by mammalian target of rapamycin and for recognition by
raptor.
Choi KM, McMahon LP, Lawrence JC Jr
J Biol Chem 2003 May 30; 278 (22), 19667-73
PMID: 12665511
-
Target of rapamycin (TOR)-signaling and RAIP motifs play distinct roles in
the mammalian TOR-dependent phosphorylation of initiation factor
4E-binding protein 1.
Beugnet A, Wang X, Proud CG
J Biol Chem 2003 Oct 17; 278 (42), 40717-22
PMID: 12912989
-
mTOR-mediated regulation of translation factors by amino acids.
Proud CG
Biochem Biophys Res Commun 2004 Jan 9; 313 (2), 429-36
PMID: 14684180
-
PLD2 forms a functional complex with mTOR/raptor to transduce mitogenic
signals.
Ha SH, Kim DH, Kim IS, Kim JH, Lee MN, Lee HJ, Kim J, Jang SK, Suh PG, Ryu SH
Cell Signal 2006 Dec; 18 (12), 2283-91
PMID: 16837165
-
Serotonin increases phosphorylation of synaptic 4EBP through TOR, but
eukaryotic initiation factor 4E levels do not limit somatic cap-dependent
translation in aplysia neurons.
Carroll M, Dyer J, Sossin WS
Mol Cell Biol 2006 Nov; 26 (22), 8586-98
PMID: 16982686
-
Hypoxia-inducible factor 1alpha is regulated by the mammalian target of
rapamycin (mTOR) via an mTOR signaling motif.
Land SC, Tee AR
J Biol Chem 2007 Jul 13; 282 (28), 20534-43
PMID: 17502379
-
The proline-rich Akt substrate of 40 kDa (PRAS40) is a physiological
substrate of mammalian target of rapamycin complex 1.
Oshiro N, Takahashi R, Yoshino K, Tanimura K, Nakashima A, Eguchi S, Miyamoto T, Hara K, Takehana K, Avruch J, Kikkawa U, Yonezawa K
J Biol Chem 2007 Jul 13; 282 (28), 20329-39
PMID: 17517883
-
TOR regulation of AGC kinases in yeast and mammals.
Jacinto E, Lorberg A
Biochem J 2008 Feb 15; 410 (1), 19-37
PMID: 18215152
4 GO-Terms:
5 Instances for DOC_WD40_RPTOR_TOS_1
(click table headers for sorting; Notes column: =Number of Switches, =Number of Interactions)
(click table headers for sorting; Notes column: =Number of Switches, =Number of Interactions)
Acc., Gene-, Name | Start | End | Subsequence | Logic | #Ev. | Organism | Notes |
---|---|---|---|---|---|---|---|
Q13541 EIF4EBP1 4EBP1_HUMAN |
114 | 118 | RNSPEDKRAGGEESQFEMDI | TP | 6 | Homo sapiens (Human) | |
Q9UBS0 RPS6KB2 KS6B2_HUMAN |
5 | 10 | MAAVFDLDLETEEGSEGEGE | TP | 2 | Homo sapiens (Human) | |
P23443 RPS6KB1 KS6B1_HUMAN |
28 | 33 | AEDMAGVFDIDLDQPEDAGS | TP | 2 | Homo sapiens (Human) | |
O60516 EIF4EBP3 4EBP3_HUMAN |
96 | 100 | LKEQETEEEIPDDAQFEMDI | TP | 5 | Homo sapiens (Human) | |
Q13542 EIF4EBP2 4EBP2_HUMAN |
116 | 120 | LNNHDRKHAVGDDAQFEMDI | TP | 5 | Homo sapiens (Human) |
Please cite:
ELM-the Eukaryotic Linear Motif resource-2024 update.
(PMID:37962385)
ELM data can be downloaded & distributed for non-commercial use according to the ELM Software License Agreement
ELM data can be downloaded & distributed for non-commercial use according to the ELM Software License Agreement