The Eukaryote Linear Motif resource for Functional Sites in Proteins
 
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Functional site class: AP-2 beta2 appendage CCV component motifs
Functional site description: Several motifs are responsible for the binding of accessory endocytic proteins to the beta2-subunit appendage of the adaptor protein complex AP-2 as part of their recruitment to the site of clathrin coated vesicle (CCV) formation. Proteins binding the platform subdomain have been found to be cargo family specific (for example can load all GPCRs, or all LDL receptor family members) clathrin adaptors. Accessory proteins which help in CCV formation bind the sandwich subdomain site or the alpha ear domain.
ELMs: TRG_AP2beta_CARGO_1
Description: Motif binding as a helix in a depression on the top surface of the AP-2 beta appendage platform subdomain. The pattern [ED]x(1,2)Fxx[FL]xxxR is conserved in beta Arrestins, ARH and Epsin-1, -2 of vertebrates. It is also found in homologues of other metazoans, but the pattern is sometimes not matched exactly, meaning that the ELM regular expression will not provide a match. In other lineages, if there is an equivalent motif, the pattern is likely to have diverged.
Pattern: [DE].{1,2}F[^P][^P][FL][^P][^P][^P]R (Probability: 0.0000182)
Present in taxons: Metazoa
PDB Structure: 2G30
PDB:2G30
Interaction Domain:

B2-adapt-app_C (PF09066)
Beta2-adaptin appendage, C-terminal sub-domain
(Stochiometry: 1 : 1)

o See 4 Instances for TRG_AP2beta_CARGO_1


o Abstract

At least two different surfaces of the AP-2 beta2 appendage domain can bind linear motifs in other endocytic regulatory proteins. The platform subdomain or top surface binds a helical [ED]x(1,2)Fxx[FL]xxxR motif found in Epsin-1 and -2 which bind ubiquitinated growth factor receptors, the beta-arrestins which bind GPCRs and ARH which binds LDL receptor family members. All of these function as cargo-selective clathrin adaptors, targeting surface receptors for internalization by clathrin-mediated endocytosis.

In beta-arrestin, the cargo motif is regulated by a remarkable structural rearrangement. The motif maintains the endocytosis-incompetent state by binding back on the folded core of the protein in a beta strand conformation. Apparently triggered via a beta-arrestin/GPCR interaction, the motif must be displaced and must undergo a strand to helix transition to enable the beta2 appendage binding step that drives GPCR-beta-arrestin complexes into clathrin coats.

The sandwich subdomain or side surface site binds an FxxxFxDF motif found in EPS15 and AP180 and may also accept other endocytosis proteins with variant motifs, as suggested by mutagenesis of the binding surface. The sandwich domain binders are accessory endocytic proteins (without a direct role in cargo binding) which help in CCV formation. Currently, there is no entry for the sandwich domain motif in ELM.

o 4 selected references:

o 7 GO-Terms:

o 4 Instances for TRG_AP2beta_CARGO_1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
EPN1_HUMAN 402 411 FDTEPDEFSDFDRLRTALPT true positive --- Homo sapiens (Human)
EPN2_HUMAN 456 465 NGTIKDDFSEFDNLRTSKKT true positive --- Homo sapiens (Human)
ARH_HUMAN 256 266 DDGLDEAFSRLAQSRTNPQV true positive 2G30
Homo sapiens (Human)
ARRB1_HUMAN 385 395 TNDDDIVFEDFARQRLKGMK true positive 2IV8
Homo sapiens (Human)
Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)
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