The Eukaryote Linear Motif resource for Functional Sites in Proteins
 
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Functional site class: AP2 alpha ligands
Functional site description: Motifs responsible for the binding of accessory endocytic proteins to the alpha-subunit of adaptor protein AP-2 and their recruitment to the site of clathrin coated vesicle formation.
ELMs: LIG_AP2alpha_1 LIG_AP2alpha_2
Description: The FxDxF motif is an alpha appendage binding sequence found in several regulatory and accessory proteins essential to clathrin coat assembly. It is involved in the binding of amphipysin, AP180 and synaptojanin170 to the alpha-subunit of AP-2.
Pattern: F.D.F (Probability: 0.0000169)
Present in taxons: Eukaryota Homo sapiens Mus musculus Rattus norvegicus Saccharomyces cerevisiae
PDB Structure: 1KY7
PDB:1KY7
Interaction Domain:

Alpha_adaptin_C (PF02296)
Alpha adaptin AP2, C-terminal domain
(Stochiometry: 1 : 1)

o See 11 Instances for LIG_AP2alpha_1


o Abstract

Vesicular traffic in the endocytic and secretory pathway is mediated by vesicles that carry cargo proteins. Clathrin-coated vesicles are responsible for a large fraction of the vescicular traffic that reaches the endosomal compartment, originating from the plasma membrane or from the TGN (trans-Golgi network). The assembly of the clathrin-coated vesicles is mediated by proteic adaptors, monomeric as AP180 and CALM or multimeric complexes like AP (Adaptor Protein) complexes. AP complexes are heterotetrameric proteins that simultaneously interact with clathrin and endocytic proteins: for example, the beta-subunit of AP-2 complex binds to clathrin, the mu-subunit interacts with Y-based sorting signal present in the cytosolic tails of membrane receptors and the alpha-subunit of AP-2 binds regulatory/accessory proteins involved in the control of clathrin coated vesicle formation.

o 4 selected references:

o 7 GO-Terms:

o 11 Instances for LIG_AP2alpha_1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
AMPH_HUMAN 324 328 QENIISFFEDNFVPEISVTT true positive 1KY7
Homo sapiens (Human)
Q9PTK7_XENLA 434 438 STAEVDLFGDAFAASPDEAT true positive --- Xenopus laevis (African clawed frog)
AP180_MOUSE 640 644 SSGVIDLFGDAFGSGASETQ true positive --- Mus musculus (House mouse)
AP180_MOUSE 562 566 APPALDIFGDLFDSAPEVAA true positive --- Mus musculus (House mouse)
AP180_MOUSE 436 440 VTTEVDLFGDAFAASPGEAP true positive --- Mus musculus (House mouse)
AP180_HUMAN 642 646 SSGVIDLFGDAFGSSASEPQ true positive --- Homo sapiens (Human)
AP180_HUMAN 564 568 APPALDIFGDLFESTPEVAA true positive --- Homo sapiens (Human)
AP180_HUMAN 440 444 VTAEVDLFGDAFAASPGEAP true positive --- Homo sapiens (Human)
BIN1_HUMAN 362 366 QEQILSLFEDTFVPEISVTT true positive --- Homo sapiens (Human)
AMPH_RAT 324 328 QENIINFFEDNFVPEINVTT true positive --- Rattus norvegicus (Norway rat)
AMPH_CHICK 324 328 QENIINLFDDNFVPEINVTT true positive --- Gallus gallus (Chicken)
Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)
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