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Functional site class: HCF-1 binding motif
Functional site description: The Host Cell Factor-1 (HCF-1) is a transcriptional co-activator involved in a number of important gene regulatory complexes. HCF-1 is a chromatin associated protein and it interacts with a wide variety of cellular factors including co-activators and co-repressors that function in cell growth and cell division. It is conserved from human to nematodes. HCF-1 contains several domains that mediate specific interaction with different binding partners. In particular the N-terminal region contains six kelch repeats that fold into a six-bladed propeller domain. This propeller region is sufficient to target a number of interacting proteins by recognizing a conserved DHxY peptide sequence known as the HCF-1 binding motif (HBM).
ELMs: LIG_HCF-1_HBM_1
Description: The HBM is a short well-conserved sequence motif matching [ED]HxY. (A reported exception is an NHNY in BAP1 but, as this is an isolated outlier, it has not been included in the current ELM regular expression.) The motif is typically found in transcriptional regulators that affect cell cycle. HBM belongs to the common category of beta propeller-binding motifs. Although there is not yet a solved structure for the HBM in complex with the kelch repeat propeller, the evidence for the interaction is strong and the motif description appears convincing, based on strong motif conservation in multiple protein families.
Pattern: [DE]H.Y (Probability: 0.0000507)
Present in taxons: Metazoa
Interaction Domain:

Kelch_3 (PF13415)
Galactose oxidase, central domain
(Stochiometry: 4 : 1)

o See 17 Instances for LIG_HCF-1_HBM_1


o Abstract

HCF-1, the metazoan host cell factor-1 is a conserved cellular transcription factor also called VCAF1, C1, or CCF. This protein became of interest as an accessory protein required for the lytic mode of herpes simplex virus infection in association with the virion protein VP16 (reviewed by Wysocka and Herr, 2003; Kristie et al. 2010). HCF-1 is exclusively nuclear and expressed in almost all mammalian cell types (Ajuh et al., 2002). The homologues of HCF-1 are present both in vertebrates and invertebrates but with sufficient divergence that the lineages may have somewhat different functions. The association of HCF-1 with several transcription factors showed the possible role for the protein in gene transcription (Lu et al., 1997, 1998; Lu and Misra, 2000). In addition HCF-1 may play an important role in spliceosome assembly and pre-mRNA splicing in mammals (Ajuh et al., 2002), cell proliferation (Freiman and Herr, 1997; Dutta et al., 2009) and cell cycle progression (Wysocka et al., 2001). Interactions with several E2F factors are strong indications of the importance of HCF-1 for cell cycle regulation (Tyagi et al., 2007).

The human HCF-1 polypeptide is synthesized as a large precursor that is subsequently cleaved at specific repeats located towards the centre of the protein that are specific targets of proteolysis. After cleavage the resulting family of polypeptides remain bound together through the action of two pairs of self association sequences, SAS1 and SAS2 ( Wilson et al., 2000). HCF-1 possesses several distinct polypeptide regions. The N-terminal region contains a Kelch domain consisting of six Kelch repeats, which are predicted to form a beta-propeller structure of linked beta sheets. The C-terminal region of HCF-1 encompasses two Fibronectin type III repeats. A classical bipartite nuclear localization signal (NLS), which is necessary for the nuclear localization of the protein, is located at the extreme C-terminus, just downstream of the FnIII repeats. HCF-1N is essential for G1 phase progression, whereas HCF-1C is important for proper cytokinesis. A number of transcriptional regulatory proteins contain a [DE]HxY motif designated the HCF-1 binding motif (HBM). The HBM interacts with the kelch domain, aiding recruitment of HCF-1 to the promoters it regulates. HBM-containing proteins include transcription factors such as E2Fs, Krox20, CREB3 as well as histone methyltransferases such as MLL and SET1A. The HCV transcriptional regulatory protein VP16 also contains the HBM motif and such usage may be more widespread for viral hijack of the cell cycle.

o 14 selected references:

o 9 GO-Terms:

o 17 Instances for LIG_HCF-1_HBM_1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
ZHANG_HUMAN 303 306 LFRDSPAGDHDYALPVGKQK true positive --- Homo sapiens (Human)
HPIP_HUMAN 76 79 FSQLSLHNDHPYCSPPMTFS true positive --- Homo sapiens (Human)
E2F4_HUMAN 389 392 LRLSPPPGDHDYIYNLDESE true positive --- Homo sapiens (Human)
CREBA_DROME 64 67 NGTQPIKTEHSYSLSSDVDS true positive --- Drosophila melanogaster (Fruit fly)
THA11_MOUSE 234 237 EGFPDTGSDHSYSLSSGTTE true positive --- Mus musculus (House mouse)
THAP1_HUMAN 134 137 PVNLSVFCDHNYTVEDTMHQ true positive --- Homo sapiens (Human)
THAP5_HUMAN 321 324 YGTEVLQIEHSYCRQDINKE true positive --- Homo sapiens (Human)
PPRC1_HUMAN 1295 1298 SRVHVGSGDHDYCVRSRTPP true positive --- Homo sapiens (Human)
EGR2_MOUSE 162 165 MSQTQPELDHLYSPPPPPPP true positive --- Mus musculus (House mouse)
THAP3_HUMAN 177 180 RTPNKQPSDHSYALLDLDSL true positive --- Homo sapiens (Human)
THAP2_HUMAN 123 126 ISSQQVLLEHSYAFRNPMEA true positive --- Homo sapiens (Human)
THAP6_HUMAN 139 142 EFQSQFIFEHSYSVMDSPKK true positive --- Homo sapiens (Human)
THAP9_HUMAN 123 126 NSQEVATEDHNYSLKTPLTI true positive --- Homo sapiens (Human)
VP16_HHV11 361 364 SPSEAVMREHAYSRARTKNN true positive --- Herpes simplex virus (type 1 / strain 17)
THAP7_HUMAN 229 232 PAGAYIQNEHSYQVGSALLW true positive --- Homo sapiens (Human)
E2F1_HUMAN 97 100 KRRLDLETDHQYLAESSGPA true positive --- Homo sapiens (Human)
CREB3_HUMAN 78 81 SNPCLVHHDHTYSLPRETVS true positive --- Homo sapiens (Human)

Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)

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