Accession: | |
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Functional site class: | HCF-1 binding motif |
Functional site description: | The Host Cell Factor-1 (HCF-1) is a transcriptional co-activator involved in a number of important gene regulatory complexes. HCF-1 is a chromatin associated protein and it interacts with a wide variety of cellular factors including co-activators and co-repressors that function in cell growth and cell division. It is conserved from human to nematodes. HCF-1 contains several domains that mediate specific interaction with different binding partners. In particular the N-terminal region contains six kelch repeats that fold into a six-bladed propeller domain. This propeller region is sufficient to target a number of interacting proteins by recognizing a conserved DHxY peptide sequence known as the HCF-1 binding motif (HBM). |
ELM Description: | The HBM is a short well-conserved sequence motif matching [ED]HxY. (A reported exception is an NHNY in BAP1 but, as this is an isolated outlier, it has not been included in the current ELM regular expression.) The motif is typically found in transcriptional regulators that affect cell cycle. HBM belongs to the common category of beta propeller-binding motifs. Although there is not yet a solved structure for the HBM in complex with the kelch repeat propeller, the evidence for the interaction is strong and the motif description appears convincing, based on strong motif conservation in multiple protein families. |
Pattern: | [DE]H.Y |
Pattern Probability: | 0.0000507 |
Present in taxon: | Metazoa |
Interaction Domain: |
Kelch_3 (PF13415)
Galactose oxidase, central domain
(Stochiometry: 4 : 1)
|
Abstract |
HCF-1, the metazoan host cell factor-1 is a conserved cellular transcription factor also called VCAF1, C1, or CCF. This protein became of interest as an accessory protein required for the lytic mode of herpes simplex virus infection in association with the virion protein VP16 (Wysocka,2003; Kristie,2010). HCF-1 is exclusively nuclear and expressed in almost all mammalian cell types (Ajuh,2002). The homologues of HCF-1 are present both in vertebrates and invertebrates but with sufficient divergence that the lineages may have somewhat different functions. The association of HCF-1 with several transcription factors showed the possible role for the protein in gene transcription (Lu,1997; Lu,1998; Lu,2000). In addition HCF-1 may play an important role in spliceosome assembly and pre-mRNA splicing in mammals (Ajuh,2002), cell proliferation (Freiman,1997; Machida,2009) and cell cycle progression (Wysocka,2001). Interactions with several E2F factors are strong indications of the importance of HCF-1 for cell cycle regulation (Tyagi,2007). The human HCF-1 polypeptide is synthesized as a large precursor that is subsequently cleaved at specific repeats located towards the centre of the protein that are specific targets of proteolysis. After cleavage the resulting family of polypeptides remain bound together through the action of two pairs of self association sequences, SAS1 and SAS2 (Wilson,2000). HCF-1 possesses several distinct polypeptide regions. The N-terminal region contains a Kelch domain consisting of six Kelch repeats, which are predicted to form a beta-propeller structure of linked beta sheets. The C-terminal region of HCF-1 encompasses two Fibronectin type III repeats. A classical bipartite nuclear localization signal (NLS), which is necessary for the nuclear localization of the protein, is located at the extreme C-terminus, just downstream of the FnIII repeats. HCF-1N is essential for G1 phase progression, whereas HCF-1C is important for proper cytokinesis. A number of transcriptional regulatory proteins contain a [DE]HxY motif designated the HCF-1 binding motif (HBM). The HBM interacts with the kelch domain, aiding recruitment of HCF-1 to the promoters it regulates. HBM-containing proteins include transcription factors such as E2Fs, Krox20, CREB3 as well as histone methyltransferases such as MLL and SET1A. The HCV transcriptional regulatory protein VP16 also contains the HBM motif and such usage may be more widespread for viral hijack of the cell cycle. |
9 GO-Terms:
17 Instances for LIG_HCF-1_HBM_1
(click table headers for sorting; Notes column: =Number of Switches, =Number of Interactions)
(click table headers for sorting; Notes column: =Number of Switches, =Number of Interactions)
Please cite:
ELM-the Eukaryotic Linear Motif resource-2024 update.
(PMID:37962385)
ELM data can be downloaded & distributed for non-commercial use according to the ELM Software License Agreement
ELM data can be downloaded & distributed for non-commercial use according to the ELM Software License Agreement