The Eukaryote Linear Motif resource for Functional Sites in Proteins
 
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Functional site class: FHA phosphopeptide ligands
Functional site description: The FHA domain is a signal transduction module which recognizes phosphothreonine containing peptides on the ligand proteins. FHA domains partake in many signalling processes but are especially prevalent in nuclear proteins that are involved in cell cycle checkpoint, DNA repair and transcriptional regulation.
ELMs: LIG_FHA_1 LIG_FHA_2
Description: LIG_FHA_2 motifs are short phosphothreonine peptide modules contains acidic amino acids at the pT+3 position. The motif has the consensus sequence of T..[ED]. FHA domains with this preference are found in checkpoint/repair proteins MRC1 and Rad9 of fungi and metazoan Xrcc1 (Luo et al.,2004) and Xrcc4 (Koch et al.,2004).
Pattern: ..(T)..[DE]. (Probability: 0.0082864)
Present in taxons: Eukaryota
PDB Structure: 1K3N
<img src="/media/pdb.ico.png"/><a href="http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1K3N" target="_blank">1K3N</a>
Interaction Domain:

FHA (PF00498)
FHA domain
(Stochiometry: 1 : 1)

o See 6 Instances for LIG_FHA_2


o Abstract

The forkhead-associated FHA domain is a phosphopeptide-binding domain first identified in a group of forkhead transcription factors (Hofmann and Bucher, 1995). FHA are small domains (<100 aminoacids) which form a sandwich of two antiparallel beta sheets (Walker et al., 2000). They are present in a wide variety of proteins from both prokaryotes and eukaryotes (Walker et al., 2000). The existence of FHA domains in a wide variety of proteins means they are involved in diverse cellular functions including signal transduction and vesicular transport. In plants, FHA domains participate in the regulation of receptor-like protein kinase signalling pathways (Doren et al., 2003). There are many nuclear FHA-domain containing proteins: these have a variety of roles involved in cell-cycle checkpoint control, DNA repair, signal transduction, transcriptional regulation, and pre-mRNA splicing. Some of the FHA domain containing proteins are present in the plasma membrane. While FHAs bind to phosphothreonine motifs, BRCT domains recognize phosphoserine motifs in otherwise similar nuclear regulatory contexts. Although weak in vitro binding of phosphoserine and phosphotyrosine peptides has been observed, all high affinity interactions utilize phosphothreonine, which may be an essential requirement for the biological ligands. The optimal FHA domain binding sequence is a phosphothreonine peptide with pT+3 specificity (Li et al., 2003). So far there are two well characterised motifs TXX[ILV] and TXX[DE] - while TXXC and TXXA have been observed, they are not currently modelled in ELM. The TXXC linear motif forms part of a larger induced fit interaction with the FHA domain (Byeon et al.,2004). More variations among the FHA-binding motifs are expected to be found.

o 4 selected references:

o 7 GO-Terms:

o 6 Instances for LIG_FHA_2
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
XRCC4_HUMAN 231 237 RDPVYDESTDEESENQTDLS true positive --- Homo sapiens (Human)
MRC1_SCHPO 643 649 SQVDSLVPTQLDSTIPTQID true positive --- Schizosaccharomyces pombe (Fission yeast)
XRCC4_MOUSE 229 235 EHGLYDGSTDEESGAPVQAA true positive --- Mus musculus (House mouse)
RAD9_YEAST 153 159 LRKKMTFQTPTDPLEQKTFK true positive 1K3N
Saccharomyces cerevisiae (Baker"s yeast)
RAD9_YEAST 190 196 EENASLEVTEADATFVQMAE true positive 1K3Q
Saccharomyces cerevisiae (Baker"s yeast)
XRCC1_HUMAN 521 527 YAGSTDENTDSEEHQEPPDL true positive --- Homo sapiens (Human)

Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)

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