<< LIG_SUMO_SBM_2 << |
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| Functional site class: | SxIP motif |
| Functional site description: | End binding homology (EBH) domains recognize SxIP motifs embedded within basic and Pro/Ser rich sequence regions of microtubule plus-end tracking proteins (+TIPs). The EBH-SxIP interaction is used by numerous +TIPs to target end binding (EB) proteins at growing microtubule ends. |
|---|---|
| ELMs: | LIG_SxIP_EBH_1 |
| Description: | SxIP motifs within basic and Pro/Ser rich sequence regions bind to EBH domains of EB proteins. Both, the SxIP sequence as well as basic, not strictly conserved, residues in the vicinity of the motif site contribute to the EBH-SxIP binding affinity. Some SxIP motifs are known to be regulated by phosphorylation while acidic residues are strongly disfavoured in the local regions. The current regular expression partially captures this context. There must be either no negative charge within 5 residues or else a basic residue closer to the SxIP than an acidic residue. All SxIP motifs reported by Honappa et al. (2009) are detected by the pattern. There is one report of a functional SxLP motif in a strongly basic sequence context (Fong et al., 2009; 19553473). For the moment, the ELM pattern excludes Leu until binding affinities and sequence context of SxLP motifs are better described. Difficult to predict SxIP in entire Proteomes. Possible to predict in proteins known to bind directly to EBs and associated with microtubules. |
| Pattern: | ([KR][^ED]{0,5}[ST].IP[^ED]{5,5})|([^ED]{5,5}[ST].IP[^ED]{0,5}[KR]) (Probability: 0.0002096) |
| Present in taxons: |
Eukaryota
|
PDB Structure: 3GJO
|
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| Interaction Domain: |
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See 9 Instances for LIG_SxIP_EBH_1
|
| The end binding homology (EBH) domain (Pfam accession code PF03271) is a small, approximately 50-residue protein module highly conserved in organisms from yeast to man. It is exclusively found in end binding (EB) proteins. EB proteins autonomously track growing microtubule plus ends and act as a hub within dynamic microtubule plus-end tracking protein (+TIP) networks. +TIPs constitute a diverse group of evolutionarily conserved microtubule-associated proteins that specifically accumulate at the ends of growing microtubules. They play important roles in essential cellular activities, including chromosome segregation, cell polarization and migration, organelle transport, and intracellular signalling. |
(click table headers for sorting)
| Sequence | Start | End | Subsequence | Instance Logic | PDB | Organism |
|---|---|---|---|---|---|---|
APC_HUMAN |
2801 | 2811 | STSARPSQIPTPVNNNTKKR | true positive | --- |
Homo sapiens
(Human)
|
CLAP2_HUMAN |
492 | 502 | ASAQKRSKIPRSQGCSREAS | true positive | --- |
Homo sapiens
(Human)
|
CLAP2_HUMAN |
515 | 525 | LSVARSSRIPRPSVSQGCSR | true positive | --- |
Homo sapiens
(Human)
|
STIM1_HUMAN |
637 | 651 | ALQASRNTRIPHLAGKKAVA | true positive | --- |
Homo sapiens
(Human)
|
KIF2C_HUMAN |
93 | 104 | QKQKRRSVNSKIPAPKESLR | true positive | --- |
Homo sapiens
(Human)
|
MELPH_MOUSE |
493 | 506 | PSGKPRRKSGIPIFLPRVTE | true positive | --- |
Mus musculus
(House mouse)
|
PSRC1_HUMAN |
276 | 289 | SSSQLPIPSAIPRPASRMPL | true positive | --- |
Homo sapiens
(Human)
|
SRCN1_HUMAN |
1032 | 1046 | SEKPSASRTSIPVLTSFGAR | true positive | --- |
Homo sapiens
(Human)
|
DYST_HUMAN |
7545 | 7558 | SRPSTAKPSKIPTPQRKSPA | true positive | 3GJO |
Homo sapiens
(Human)
|
Please cite: ELM - the database of eukaryotic linear motifs (PMID:
22110040)
ELM data can be downloaded and distributed for non-commercial use according to the ELM Software License Agreement






