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Functional site class: SxIP motif
Functional site description: End binding homology (EBH) domains recognize SxIP motifs embedded within basic and Pro/Ser rich sequence regions of microtubule plus-end tracking proteins (+TIPs). The EBH-SxIP interaction is used by numerous +TIPs to target end binding (EB) proteins at growing microtubule ends.
ELMs: LIG_SxIP_EBH_1
Description: SxIP motifs within basic and Pro/Ser rich sequence regions bind to EBH domains of EB proteins. Both, the SxIP sequence as well as basic, not strictly conserved, residues in the vicinity of the motif site contribute to the EBH-SxIP binding affinity. Some SxIP motifs are known to be regulated by phosphorylation while acidic residues are strongly disfavoured in the local regions. The current regular expression partially captures this context. There must be either no negative charge within 5 residues or else a basic residue closer to the SxIP than an acidic residue. All SxIP motifs reported by Honappa et al. (2009) are detected by the pattern. There is one report of a functional SxLP motif in a strongly basic sequence context (Fong et al., 2009; PMID:19553473). For the moment, the ELM pattern excludes Leu until binding affinities and sequence context of SxLP motifs are better described. Difficult to predict SxIP in entire Proteomes. Possible to predict in proteins known to bind directly to EBs and associated with microtubules.
Pattern: ([KR][^ED]{0,5}[ST].IP[^ED]{5,5})|([^ED]{5,5}[ST].IP[^ED]{0,5}[KR]) (Probability: 0.0002096)
Present in taxons: Eukaryota
PDB Structure: 3GJO
PDB:3GJO
Interaction Domain:

EB1 (PF03271)
EB1-like C-terminal motif
(Stochiometry: 1 : 1)

o See 9 Instances for LIG_SxIP_EBH_1


o Abstract

The end binding homology (EBH) domain (Pfam accession code PF03271) is a small, approximately 50-residue protein module highly conserved in organisms from yeast to man. It is exclusively found in end binding (EB) proteins. EB proteins autonomously track growing microtubule plus ends and act as a hub within dynamic microtubule plus-end tracking protein (+TIP) networks. +TIPs constitute a diverse group of evolutionarily conserved microtubule-associated proteins that specifically accumulate at the ends of growing microtubules. They play important roles in essential cellular activities, including chromosome segregation, cell polarization and migration, organelle transport, and intracellular signalling.

The C-terminal EBH domain of EB proteins binds to an array of structurally and functionally unrelated +TIP binding partners, including the adenomatous polyposis coli (APC) tumor suppressor protein, the microtubule-actin crosslinking factor (MACF), the cytoplasmic linker protein (CLIP170), CLIP-associated proteins (CLASPs), the transmembrane protein stromal interaction molecule-1 (STIM1), the dynactin large subunit p150glued, and the mitotic centromere-associated kinesin (MCAK). SxIP motifs embedded within basic and Pro/Ser rich sequence regions of numerous +TIPs specifically bind to highly conserved residues shaping a hydrophobic groove in the EBH domain. Thus EBH domains are SxIP recognition domains. The EBH-SxIP interaction is used to target +TIPs to EBs at growing microtubule ends. Therefore, SxIP motifs act as general microtubule tip localization signals (MtLS).

o 3 selected references:

o 11 GO-Terms:

o 9 Instances for LIG_SxIP_EBH_1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
DYST_HUMAN 7545 7558 SRPSTAKPSKIPTPQRKSPA true positive 3GJO
Homo sapiens (Human)
SRCN1_HUMAN 1032 1046 SEKPSASRTSIPVLTSFGAR true positive --- Homo sapiens (Human)
PSRC1_HUMAN 276 289 SSSQLPIPSAIPRPASRMPL true positive --- Homo sapiens (Human)
MELPH_MOUSE 493 506 PSGKPRRKSGIPIFLPRVTE true positive --- Mus musculus (House mouse)
KIF2C_HUMAN 93 104 QKQKRRSVNSKIPAPKESLR true positive --- Homo sapiens (Human)
STIM1_HUMAN 637 651 ALQASRNTRIPHLAGKKAVA true positive --- Homo sapiens (Human)
CLAP2_HUMAN 515 525 LSVARSSRIPRPSVSQGCSR true positive --- Homo sapiens (Human)
CLAP2_HUMAN 492 502 ASAQKRSKIPRSQGCSREAS true positive --- Homo sapiens (Human)
APC_HUMAN 2801 2811 STSARPSQIPTPVNNNTKKR true positive --- Homo sapiens (Human)
Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)
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