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Functional site class: GLEBS Motif
Functional site description: The GLEBS binding motif is an important cell cycle regulatory motif involved in the spindle checkpoint.
ELMs: LIG_GLEBS_BUB3_1
Description: The Gle2-binding-sequence (GLEBS) motif binds to the WD40 domains of Gle2, Bub3 and BubR1 and possibly other paralogous proteins. The first Glu/Asn is important for the overall backbone geometry and makes some water contacts. The second position is a hydrophobic core packing residue. The third residue caps the first helix. The pair of adjacent glutamic acids are deep in the pocket of the binding domain and are the key binding residues. The following residue is important for the core helix.
Pattern: [EN][FYLW][NSQ].EE[ILMVF][^P][LIVMFA] (Probability: 0.0000009)
Present in taxons: Eukaryota Homo sapiens Mus musculus Saccharomyces cerevisiae
PDB Structure: 2I3S
PDB:2I3S
Interaction Domain:

WD40 (PF00400)
WD domain, G-beta repeat
(Stochiometry: 1 : 1)

o See 5 Instances for LIG_GLEBS_BUB3_1


o Abstract

The cell cycle is the process through which a cell replicates itself resulting in two identical daughter cells. The progression of the cell through this process is monitored by a number of checkpoints (Wells 1996, PMID:15157461). These cell cycle checkpoints halt, abort or delay the progression of the cell through the cycle until certain events, requirements or processes have correctly taken place.
Cell cycle arrest protein bub3 is an important cell cycle checkpoint protein controlling the response of the cell to incorrect spindle formation. Mitotic checkpoint protein BUB3, together with mitotic arrest deficient like protein Mad2, mitotic spindle checkpoint protein Mad3, and cell division cycle homolog protein Cdc20 forms part of the spindle assembly checkpoint, which acts as an inhibitory complex at the kinetochore, preventing the progression of mitosis (Hardwick et al. 2000, PMID:10704439). The spindle assembly checkpoint is important for regulating the correct segregation of chromosomes to daughter cells during mitosis, by monitoring the progression from metaphase to anaphase. Mad3 in yeast is an integral, but not essential, part of the spindle checkpoint. When it detects defects in the kinetochore and microtububle interactions in the mitotic spindle it arrests the transition, allowing the defective sister chromatid pairs to correctly link up. This ensures the correct segregation later. Proper segregation of the chromatids is achieved when the kinetochores of the two sister chromatids are attached to opposite spindle poles. The acetylation of BUBR1 has been shown to regulate its degradation and therefore the inactivation of the spindle assembly checkpoint.

Bub3 yeast is a substrate for the protein kinase Bub1 yeast (Roberts et al 1994), and interacts physically with Mad3 (Hardwick et al 2000, PMID:10704439). Homologs of the yeast BUB3 in Drosophila, mouse and human have been identified and most have been shown to localise to unattached kinetochores.

Cdc20 interacts with mad2 in the anaphase-promoting complex to inhibit the transition to anaphase (Rudner and Murray 1996, PMID:8939672). This pathway involves the cdc20 mediated ubquitination of securin. Securin blocks Separase function, delaying the degradation of the cohesin complex, which is a large complex that forms around the sister chromatids after replication. The degradation of this complex allows the separation of the sister chromatids. BUBR1 is involved in the inhibition of the anaphase-promoting complex/cyclosome (APC/C) by blocking the binding of CDC20 to APC/C, independently of its kinase activity. Shin et al. (2003; PMID:14706340) state that BUBR1 may also be involved in triggering apoptosis in polyploid cells that exit aberrantly from mitotic arrest.

The GLEBS motif was identified in yeast nuclear porin Nup116 docking with nuclear pore protein Gle2 (Bailer et al., 1998, PMID:9463388). The GLEBS motif found in mammalian MAD3 and BUB1 is sufficient and necessary for the interaction with BUB3 (Larsen et al. 2007, PMID:7969164). It is proposed by Larsen et al. that the GLEBS motif containing protein undergoes a structural readjustment in the segment containing the motif and that this enables the attachment of kinetochores. The motif is shown in structural studies to lie across the face of the BUB3 WD40 beta-propeller domain. Most of the conserved residues pack against the binding pocket at the centre of the WD40 containing protein. However, other residues also maintain the alpha helical structure projecting out of the centre and perhaps this may be important for further proteins to join the complex.

o 9 GO-Terms:

o 5 Instances for LIG_GLEBS_BUB3_1
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
NU116_YEAST 150 158 MPEYRNFSFEELRFQDYQAG true positive --- Saccharomyces cerevisiae (Baker's yeast)
BUB1B_HUMAN 409 417 YAGVGEFSFEEIRAEVFRKK true positive --- Homo sapiens (Human)
BUB1_HUMAN 248 256 IRGESEFSFEELRAQKYNQR true positive --- Homo sapiens (Human)
BUB1_YEAST 333 341 PENDEEFNTEEILAMIKGLY true positive 2I3S
Saccharomyces cerevisiae (Baker's yeast)
MAD3_YEAST 378 386 KGGRLEFSLEEVLAISRNVY true positive 2I3T
Saccharomyces cerevisiae (Baker's yeast)
Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)
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