The Eukaryote Linear Motif resource for Functional Sites in Proteins
 
 << LIG_COP1 <<  Menu  >> LIG_CRL4_Cdt2_1 >> 
 
Functional site class: Corepressor nuclear receptor box
Functional site description: The CORNR box motif is found in coprepressors of nuclear receptors (NRs), and confers binding to NRs
ELMs: LIG_CORNRBOX
Description: The corepressor nuclear receptor box motif confers binding to nuclear receptors.
Pattern: L[^P]{2,2}[HI]I[^P]{2,2}[IAV][IL] (Probability: 0.0000010)
Present in taxons: Metazoa
PDB Structure: 1KKQ
<img src="/media/pdb.ico.png"/><a href="http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1KKQ" target="_blank">1KKQ</a>
Interaction Domain:

Hormone_recep (PF00104)
Ligand-binding domain of nuclear hormone receptor
(Stochiometry: 1 : 1)

o See 4 Instances for LIG_CORNRBOX


o Abstract

The corepressor nuclear receptor (CORNR) box is found in the N-CoR and SMRT corepressors of nuclear receptors (NRs), and confers binding to NRs. Repression of NR regulated genes is mediated by histone deacetylated which are recruited by the N-CoR and SMRT corepressors.



Both N-CoR and SMRT have two copies of the CORNR box. The consensus sequence is LxxxIxxxI/L. A structural analysis of the second CORNR box of SMRT bound to the AF-2 domain of PPARalpha shows the CORNR box is a 9 aa alpha-helix that is bound to the AF-2 domain groove of PPARalpha (11845213), in a similar manner to the related NR box (LIG_NRBOX) found in co-activators of NRs. However, preference for the CORNR box over the NR box is dictated by the exact conformation of the AF-2 domain. In the unliganded state (or when bound to agonist ligands), the AF-2 domain conformation of the NRs promotes binding of corepressors through the CORNR box. In this state, the NR boxes of coactivators does not fit into the groove.



Recent review: 11865025.

o 2 selected references:

o 6 GO-Terms:

o 4 Instances for LIG_CORNRBOX
(click table headers for sorting)
SequenceStartEndSubsequence
Instance LogicPDB Organism
NCOR1_HUMAN 2263 2271 ASNLGLEDIIRKALMGSFDD true positive 3H52
Homo sapiens (Human)
NCOR2_HUMAN 2350 2358 STNMGLEAIIRKALMGKYDQ true positive 1KKQ
Homo sapiens (Human)
NCOR2_HUMAN 2143 2151 QRVVTLAQHISEVITQDYTR true positive --- Homo sapiens (Human)
NCOR1_HUMAN 2051 2059 HRLITLADHICQIITQDFAR true positive 3N00
Homo sapiens (Human)

Please cite: ELM - the database of eukaryotic linear motifs (PMID:22110040)

ELM data can be downloaded and distributed for non-commercial use according to the ELM Software License Agreement

feedback@elm.eu.org