MOD_SUMO
ELM server details
ELM
blue dot
Functional site class:
Sumoylation site
Functional site description:
Motif recognised for modification by SUMO-1
ELM(s): MOD_SUMO
MOD_SUMO description: Motif recognised for modification by SUMO-1
Pattern: [VILMAFP]K.E
Present in taxon(s): Eukaryota  
Not represented in taxon(s):

o See instances for MOD_SUMO


o Abstract

The SUMO proteins are Small Ubiquitin-related MOdifiers that are covalently conjugated onto lysine residues within target sequences. Invertebrates have a single SUMO gene, whereas the SUMO family in vertebrates have three members; SUMO-1, SUMO-2, and SUMO-3. The SUMO proteins are synthesised as inactive precursors, which are processed by SUMO specific carboxy-terminal hydrolases, resulting in novel double-glycine C-termini. The mature SUMO proteins are then activated by an activating enzyme (E1), and transferred to a conjugating enzyme (E2). Eventually, the SUMO protein is covalently linked to the target protein by the formation of an isopeptide bond between the carboxyl terminus of SUMO and an epsilon-amino group of a lysine residue of the target protein. (An E3-like factor that promotes SUMO conjugation has recently been identified (PMID: 11572779).) This process, termed sumoylation, is reversible.

Most sumoylated proteins are nuclear, and three main functional roles of SUMO have been proposed. (i) Protein targeting sumoylation has been shown to be important for nuclear import of the RanGAP1 protein, and for recruiting proteins to subnuclear protein complexes (e.g. promyelocytic leukemia protein (PML) to PML nuclear bodies). (ii) Enhancement of protein stability potential competition with (and inhibition of) ubiquitination. (iii) Transcriptional control (e.g. negative regulation of transcription from the androgen receptor).

A core motif (%KxE) has been identified as the sumoylation target for SUMO-1 (PMID: 11553772, PMID: 11121022, PMID: 10212234). SUMO-2/3 contains a %KxE site, in contrast to SUMO-1, and can thus form polymeric chains (shown in vitro, and in vivo for SUMO-2) (PMID: 11451954).

Recent reviews: PMID: 11031248, PMID: 11265250.

o Selected references

Endter C, Kzhyshkowska J, Stauber R, Dobner T
SUMO-1 modification required for transformation by adenovirus type 5 early region 1B 55-kDa oncoprotein.
Proc Natl Acad Sci U S A 2001 Sep 25;98(20) : 11312-7.
PMID: 11553772

Johnson ES, Gupta AA
An E3-like factor that promotes SUMO conjugation to the yeast septins.
Cell 2001 Sep 21;106(6) : 735-44.
PMID: 11572779

Melchior F
SUMO--nonclassical ubiquitin.
Annu Rev Cell Dev Biol 2000;16() : 591-626.
PMID: 11031248

Muller S, Hoege C, Pyrowolakis G, Jentsch S
SUMO, ubiquitin's mysterious cousin.
Nat Rev Mol Cell Biol 2001 Mar;2(3) : 202-10.
PMID: 11265250

Poukka H, Karvonen U, Janne OA, Palvimo JJ
Covalent modification of the androgen receptor by small ubiquitin-like modifier 1 (SUMO-1).
Proc Natl Acad Sci U S A 2000 Dec 19;97(26) : 14145-50.
PMID: 11121022

Sternsdorf T, Jensen K, Reich B, Will H
The nuclear dot protein sp100, characterization of domains necessary for dimerization, subcellular localization, and modification by small ubiquitin-like modifiers.
J Biol Chem 1999 Apr 30;274(18) : 12555-66.
PMID: 10212234

o This ELM has been assigned the following Gene Ontology (GO) terms for biological process, cellular component and molecular function.

Biological Process
  negative regulation of transcription
  sumoylation
  protein-nucleus import
  SUMO-dependent protein catabolism
Cellular Component
  nucleus
  PML body
Molecular Function

 

o Instances for MOD_SUMO

SequencePositionSubsequence
(Click for evidence information)
PDBGene NameProtein DescriptionOrganism
RGP1_MOUSE 525-528 IHMGLLKSEDKIKAI 1KPS
Name=Rangap1; Synonyms=Fug1; Ran GTPase-activating protein 1 (RanGAP1). Mus musculus (Mouse).
NCOA2_HUMAN 238-241 SQPKSIKEEGEDLQS - Name=NCOA2; Synonyms=TIF2; Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary factor 2). Homo sapiens (Human).
NCOA2_HUMAN 730-733 GSEVTIKQEPVSPKK - Name=NCOA2; Synonyms=TIF2; Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary factor 2). Homo sapiens (Human).
NCOA2_HUMAN 787-790 IAMKTEKEEMSFEPG - Name=NCOA2; Synonyms=TIF2; Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary factor 2). Homo sapiens (Human).
P53_HUMAN 385-388 HKKLMFKTEGPDSD - Name=TP53; Synonyms=P53; Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53) (Antigen NY-CO-13). Homo sapiens (Human).
HDAC4_HUMAN 558-561 QAGVQVKQEPIESDE - Name=HDAC4; Synonyms=KIAA0288; Histone deacetylase 4 (HD4). Homo sapiens (Human).
AP2C_HUMAN 9-12 KITDNVKYEEDCEDR - Name=TFAP2C; Transcription factor AP-2 gamma (AP2-gamma) (Activating enhancer- binding protein 2 gamma) (Transcription factor ERF-1). Homo sapiens (Human).
ARNT_HUMAN 244-247 LKTGTVKKEGQQSSM - Name=ARNT; Aryl hydrocarbon receptor nuclear translocator (ARNT protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta). Homo sapiens (Human).
AXN1_HUMAN 856-859 EEKIIGKVEKVD - Name=AXIN1; Synonyms=AXIN; Axin-1 (Axis inhibition protein 1) (hAxin). Homo sapiens (Human).
AXN1_HUMAN 859-862 IIGKVEKVD - Name=AXIN1; Synonyms=AXIN; Axin-1 (Axis inhibition protein 1) (hAxin). Homo sapiens (Human).
CDC11_YEAST 411-414 EKEAKIKQEE - Name=CDC11; Synonyms=PSL9; OrderedLocusNames=YJR076C; ORFNames=J1833; Cell division control protein 11. Saccharomyces cerevisiae (Baker's yeast).
CDC3_YEAST 286-289 LIPVIAKSDILTDEE - Name=CDC3; OrderedLocusNames=YLR314C; ORFNames=L8543.7; Cell division control protein 3. Saccharomyces cerevisiae (Baker's yeast).
CEBPA_HUMAN 160-163 LRPLVIKQEPREEDE - Name=CEBPA; CCAAT/enhancer-binding protein alpha (C/EBP alpha). Homo sapiens (Human).
CEBPB_HUMAN 173-176 PPPAELKAEPGFEPA - Name=CEBPB; Synonyms=TCF5; ORFNames=PP9092; CCAAT/enhancer-binding protein beta (C/EBP beta) (Nuclear factor NF- IL6) (Transcription factor 5). Homo sapiens (Human).
CEBPD_HUMAN 119-122 AAPRLLKREPDWGDG - Name=CEBPD; CCAAT/enhancer-binding protein delta (C/EBP delta) (Nuclear factor NF- IL6-beta) (NF-IL6-beta). Homo sapiens (Human).
CEBPE_HUMAN 120-123 PRAVAVKEEPRGPEG - Name=CEBPE; CCAAT/enhancer-binding protein epsilon (C/EBP epsilon). Homo sapiens (Human).
GCR_HUMAN 276-279 VTLPQVKTEKEDFIE - Name=NR3C1; Synonyms=GRL; Glucocorticoid receptor (GR) (Nuclear receptor subfamily 3 group C member 1). Homo sapiens (Human).
GCR_HUMAN 292-295 CTPGVIKQEKLGTVY - Name=NR3C1; Synonyms=GRL; Glucocorticoid receptor (GR) (Nuclear receptor subfamily 3 group C member 1). Homo sapiens (Human).
HDAC1_HUMAN 443-446 KKAKRVKTEDEKEKD - Name=HDAC1; Synonyms=RPD3L1; Histone deacetylase 1 (HD1). Homo sapiens (Human).
HDAC1_HUMAN 475-478 PEAKGVKEEVKLA - Name=HDAC1; Synonyms=RPD3L1; Histone deacetylase 1 (HD1). Homo sapiens (Human).
HSF1_HUMAN 297-300 SPLVRVKEEPPSPPQ - Name=HSF1; Synonyms=HSTF1; Heat shock factor protein 1 (HSF 1) (Heat shock transcription factor 1) (HSTF 1). Homo sapiens (Human).
LEF1_MOUSE 24-27 DEMIPFKDEGDPQKE - Name=Lef1; Synonyms=Lef-1; Lymphoid enhancer-binding factor 1 (LEF-1). Mus musculus (Mouse).
LEF1_MOUSE 266-269 IVTPQVKQEHPHTDS - Name=Lef1; Synonyms=Lef-1; Lymphoid enhancer-binding factor 1 (LEF-1). Mus musculus (Mouse).
MYB_HUMAN 502-505 DLQDVIKQESDESGI - Name=MYB; Myb proto-oncogene protein (C-myb). Homo sapiens (Human).
MYB_HUMAN 526-529 PLLKKIKQEVESPTD - Name=MYB; Myb proto-oncogene protein (C-myb). Homo sapiens (Human).
PCNA_HUMAN 163-166 VVISCAKDGVKFSAS - Name=PCNA; Proliferating cell nuclear antigen (PCNA) (Cyclin). Homo sapiens (Human).
PCNA_YEAST 126-129 IDADFLKIEELQYDS - Name=POL30; OrderedLocusNames=YBR088C; ORFNames=YBR0811; Proliferating cell nuclear antigen (PCNA). Saccharomyces cerevisiae (Baker's yeast).
PCNA_YEAST 163-166 INIMITKETIKFVAD - Name=POL30; OrderedLocusNames=YBR088C; ORFNames=YBR0811; Proliferating cell nuclear antigen (PCNA). Saccharomyces cerevisiae (Baker's yeast).
PML_HUMAN 159-162 AHQWFLKHEARPLAE - Name=PML; Synonyms=MYL, RNF71, TRIM19; Probable transcription factor PML (Tripartite motif-containing protein 19) (RING finger protein 71). Homo sapiens (Human).
PRGR_HUMAN 387-390 PPALKIKEEEEGAEA - Name=PGR; Synonyms=NR3C3; Progesterone receptor (PR) (Nuclear receptor subfamily 3 group C member 3). Homo sapiens (Human).
SALL1_HUMAN 1085-1088 SLSSLIKTEVNGFVH - Name=SALL1; Synonyms=SAL1; Sal-like protein 1 (Zinc finger protein SALL1) (Spalt-like transcription factor 1) (HSal1). Homo sapiens (Human).
SHS1_YEAST 425-428 QLGREIKQENENLIR - Name=SHS1; Synonyms=SEP7; OrderedLocusNames=YDL225W; Seventh homolog of septin 1 (Septation protein 7). Saccharomyces cerevisiae (Baker's yeast).
SHS1_YEAST 436-439 NLIRSIKTESSPKFL - Name=SHS1; Synonyms=SEP7; OrderedLocusNames=YDL225W; Seventh homolog of septin 1 (Septation protein 7). Saccharomyces cerevisiae (Baker's yeast).
SUMO3_HUMAN 10-13 KPKEGVKTENDHINL - Name=SUMO3; Synonyms=SMT3A, SMT3H1; Small ubiquitin-related modifier 3 precursor (SUMO-3) (Ubiquitin-like protein SMT3A) (SMT3 homolog 1) (SUMO-2). Homo sapiens (Human).
SUMO2_HUMAN 10-13 KPKEGVKTENNDHIN - Name=SUMO2; Synonyms=SMT3B, SMT3H2; Small ubiquitin-related modifier 2 precursor (SUMO-2) (Ubiquitin-like protein SMT3B) (SMT3 homolog 2) (Sentrin-2) (HSMT3) (SUMO-3). Homo sapiens (Human).
SP100_HUMAN 296-299 VRLVDIKKEKPFSNS - Name=SP100; Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear dot-associated Sp100 protein) (Lysp100b). Homo sapiens (Human).
SP3_HUMAN 550-553 PADIRIKEEEPDPEE - Name=SP3; Transcription factor Sp3 (SPR-2). Homo sapiens (Human).
TDG_HUMAN 329-332 AKKMAVKEEKYDPGY - Name=TDG; G/T mismatch-specific thymine DNA glycosylase (EC 3.2.2.-). Homo sapiens (Human).
VIE1_HCMVA 449-452 EDTVSVKSEPVSEIE - Name=UL123; 55 kDa immediate-early protein 1 (IE1). Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5).
SATB2_HUMAN 232-235 KKYKKIKVERVEREN - Name=SATB2; Synonyms=KIAA1034; DNA-binding protein SATB2 (Special AT-rich sequence-binding protein 2). Homo sapiens (Human).
SATB2_HUMAN 349-352 PIPRAVKPEPTNSSV - Name=SATB2; Synonyms=KIAA1034; DNA-binding protein SATB2 (Special AT-rich sequence-binding protein 2). Homo sapiens (Human).