| MOD_SUMO |
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| Functional site
class: |
Sumoylation site |
Functional site description: |
Motif recognised for modification by SUMO-1 |
| ELM(s): |
MOD_SUMO |
| MOD_SUMO description: |
Motif recognised for modification by SUMO-1 |
| Pattern: |
[VILMAFP]K.E |
| Present in taxon(s): |
Eukaryota |
| Not represented in taxon(s): |
|
See instances for MOD_SUMO
Abstract
The SUMO proteins are Small Ubiquitin-related MOdifiers that are covalently conjugated onto lysine residues within target sequences. Invertebrates have a single SUMO gene, whereas the SUMO family in vertebrates have three members; SUMO-1, SUMO-2, and SUMO-3. The SUMO proteins are synthesised as inactive precursors, which are processed by SUMO specific carboxy-terminal hydrolases, resulting in novel double-glycine C-termini. The mature SUMO proteins are then activated by an activating enzyme (E1), and transferred to a conjugating enzyme (E2). Eventually, the SUMO protein is covalently linked to the target protein by the formation of an isopeptide bond between the carboxyl terminus of SUMO and an epsilon-amino group of a lysine residue of the target protein. (An E3-like factor that promotes SUMO conjugation has recently been identified (PMID: 11572779).) This process, termed sumoylation, is reversible.
Most sumoylated proteins are nuclear, and three main functional roles of SUMO have been proposed. (i) Protein targeting sumoylation has been shown to be important for nuclear import of the RanGAP1 protein, and for recruiting proteins to subnuclear protein complexes (e.g. promyelocytic leukemia protein (PML) to PML nuclear bodies). (ii) Enhancement of protein stability potential competition with (and inhibition of) ubiquitination. (iii) Transcriptional control (e.g. negative regulation of transcription from the androgen receptor).
A core motif (%KxE) has been identified as the sumoylation target for SUMO-1 (PMID: 11553772, PMID: 11121022, PMID: 10212234). SUMO-2/3 contains a %KxE site, in contrast to SUMO-1, and can thus form polymeric chains (shown in vitro, and in vivo for SUMO-2) (PMID: 11451954).
Recent reviews: PMID: 11031248, PMID: 11265250.
Selected references
| Johnson ES, Gupta AA | | An E3-like factor that promotes SUMO conjugation to the yeast septins. | | Cell 2001 Sep 21;106(6) : 735-44. | | PMID: 11572779 |
| Melchior F | | SUMO--nonclassical ubiquitin. | | Annu Rev Cell Dev Biol 2000;16() : 591-626. | | PMID: 11031248 |
| Sternsdorf T, Jensen K, Reich B, Will H | | The nuclear dot protein sp100, characterization of domains necessary for
dimerization, subcellular localization, and modification by small
ubiquitin-like modifiers. | | J Biol Chem 1999 Apr 30;274(18) : 12555-66. | | PMID: 10212234 |
This ELM has been assigned the following Gene Ontology (GO) terms for biological process, cellular component and molecular function.
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Biological Process |
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negative regulation of transcription
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sumoylation
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protein-nucleus import
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SUMO-dependent protein catabolism
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Cellular Component |
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nucleus |
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PML body |
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Molecular Function |
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| Sequence | Position | Subsequence (Click for evidence information) | PDB | Gene Name | Protein Description | Organism |
| RGP1_MOUSE |
525-528 |
IHMGLLKSEDKIKAI |
1KPS
|
Name=Rangap1; Synonyms=Fug1; |
Ran GTPase-activating protein 1 (RanGAP1). |
Mus musculus (Mouse). |
| NCOA2_HUMAN |
238-241 |
SQPKSIKEEGEDLQS |
- |
Name=NCOA2; Synonyms=TIF2; |
Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary
factor 2). |
Homo sapiens (Human). |
| NCOA2_HUMAN |
730-733 |
GSEVTIKQEPVSPKK |
- |
Name=NCOA2; Synonyms=TIF2; |
Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary
factor 2). |
Homo sapiens (Human). |
| NCOA2_HUMAN |
787-790 |
IAMKTEKEEMSFEPG |
- |
Name=NCOA2; Synonyms=TIF2; |
Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary
factor 2). |
Homo sapiens (Human). |
| P53_HUMAN |
385-388 |
HKKLMFKTEGPDSD |
- |
Name=TP53; Synonyms=P53; |
Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53)
(Antigen NY-CO-13). |
Homo sapiens (Human). |
| HDAC4_HUMAN |
558-561 |
QAGVQVKQEPIESDE |
- |
Name=HDAC4; Synonyms=KIAA0288; |
Histone deacetylase 4 (HD4). |
Homo sapiens (Human). |
| AP2C_HUMAN |
9-12 |
KITDNVKYEEDCEDR |
- |
Name=TFAP2C; |
Transcription factor AP-2 gamma (AP2-gamma) (Activating enhancer-
binding protein 2 gamma) (Transcription factor ERF-1). |
Homo sapiens (Human). |
| ARNT_HUMAN |
244-247 |
LKTGTVKKEGQQSSM |
- |
Name=ARNT; |
Aryl hydrocarbon receptor nuclear translocator (ARNT protein) (Dioxin
receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta)
(HIF-1 beta). |
Homo sapiens (Human). |
| AXN1_HUMAN |
856-859 |
EEKIIGKVEKVD |
- |
Name=AXIN1; Synonyms=AXIN; |
Axin-1 (Axis inhibition protein 1) (hAxin). |
Homo sapiens (Human). |
| AXN1_HUMAN |
859-862 |
IIGKVEKVD |
- |
Name=AXIN1; Synonyms=AXIN; |
Axin-1 (Axis inhibition protein 1) (hAxin). |
Homo sapiens (Human). |
| CDC11_YEAST |
411-414 |
EKEAKIKQEE |
- |
Name=CDC11; Synonyms=PSL9; OrderedLocusNames=YJR076C; ORFNames=J1833; |
Cell division control protein 11. |
Saccharomyces cerevisiae (Baker's yeast). |
| CDC3_YEAST |
286-289 |
LIPVIAKSDILTDEE |
- |
Name=CDC3; OrderedLocusNames=YLR314C; ORFNames=L8543.7; |
Cell division control protein 3. |
Saccharomyces cerevisiae (Baker's yeast). |
| CEBPA_HUMAN |
160-163 |
LRPLVIKQEPREEDE |
- |
Name=CEBPA; |
CCAAT/enhancer-binding protein alpha (C/EBP alpha). |
Homo sapiens (Human). |
| CEBPB_HUMAN |
173-176 |
PPPAELKAEPGFEPA |
- |
Name=CEBPB; Synonyms=TCF5; ORFNames=PP9092; |
CCAAT/enhancer-binding protein beta (C/EBP beta) (Nuclear factor NF-
IL6) (Transcription factor 5). |
Homo sapiens (Human). |
| CEBPD_HUMAN |
119-122 |
AAPRLLKREPDWGDG |
- |
Name=CEBPD; |
CCAAT/enhancer-binding protein delta (C/EBP delta) (Nuclear factor NF-
IL6-beta) (NF-IL6-beta). |
Homo sapiens (Human). |
| CEBPE_HUMAN |
120-123 |
PRAVAVKEEPRGPEG |
- |
Name=CEBPE; |
CCAAT/enhancer-binding protein epsilon (C/EBP epsilon). |
Homo sapiens (Human). |
| GCR_HUMAN |
276-279 |
VTLPQVKTEKEDFIE |
- |
Name=NR3C1; Synonyms=GRL; |
Glucocorticoid receptor (GR) (Nuclear receptor subfamily 3 group C
member 1). |
Homo sapiens (Human). |
| GCR_HUMAN |
292-295 |
CTPGVIKQEKLGTVY |
- |
Name=NR3C1; Synonyms=GRL; |
Glucocorticoid receptor (GR) (Nuclear receptor subfamily 3 group C
member 1). |
Homo sapiens (Human). |
| HDAC1_HUMAN |
443-446 |
KKAKRVKTEDEKEKD |
- |
Name=HDAC1; Synonyms=RPD3L1; |
Histone deacetylase 1 (HD1). |
Homo sapiens (Human). |
| HDAC1_HUMAN |
475-478 |
PEAKGVKEEVKLA |
- |
Name=HDAC1; Synonyms=RPD3L1; |
Histone deacetylase 1 (HD1). |
Homo sapiens (Human). |
| HSF1_HUMAN |
297-300 |
SPLVRVKEEPPSPPQ |
- |
Name=HSF1; Synonyms=HSTF1; |
Heat shock factor protein 1 (HSF 1) (Heat shock transcription factor
1) (HSTF 1). |
Homo sapiens (Human). |
| LEF1_MOUSE |
24-27 |
DEMIPFKDEGDPQKE |
- |
Name=Lef1; Synonyms=Lef-1; |
Lymphoid enhancer-binding factor 1 (LEF-1). |
Mus musculus (Mouse). |
| LEF1_MOUSE |
266-269 |
IVTPQVKQEHPHTDS |
- |
Name=Lef1; Synonyms=Lef-1; |
Lymphoid enhancer-binding factor 1 (LEF-1). |
Mus musculus (Mouse). |
| MYB_HUMAN |
502-505 |
DLQDVIKQESDESGI |
- |
Name=MYB; |
Myb proto-oncogene protein (C-myb). |
Homo sapiens (Human). |
| MYB_HUMAN |
526-529 |
PLLKKIKQEVESPTD |
- |
Name=MYB; |
Myb proto-oncogene protein (C-myb). |
Homo sapiens (Human). |
| PCNA_HUMAN |
163-166 |
VVISCAKDGVKFSAS |
- |
Name=PCNA; |
Proliferating cell nuclear antigen (PCNA) (Cyclin). |
Homo sapiens (Human). |
| PCNA_YEAST |
126-129 |
IDADFLKIEELQYDS |
- |
Name=POL30; OrderedLocusNames=YBR088C; ORFNames=YBR0811; |
Proliferating cell nuclear antigen (PCNA). |
Saccharomyces cerevisiae (Baker's yeast). |
| PCNA_YEAST |
163-166 |
INIMITKETIKFVAD |
- |
Name=POL30; OrderedLocusNames=YBR088C; ORFNames=YBR0811; |
Proliferating cell nuclear antigen (PCNA). |
Saccharomyces cerevisiae (Baker's yeast). |
| PML_HUMAN |
159-162 |
AHQWFLKHEARPLAE |
- |
Name=PML; Synonyms=MYL, RNF71, TRIM19; |
Probable transcription factor PML (Tripartite motif-containing protein
19) (RING finger protein 71). |
Homo sapiens (Human). |
| PRGR_HUMAN |
387-390 |
PPALKIKEEEEGAEA |
- |
Name=PGR; Synonyms=NR3C3; |
Progesterone receptor (PR) (Nuclear receptor subfamily 3 group C
member 3). |
Homo sapiens (Human). |
| SALL1_HUMAN |
1085-1088 |
SLSSLIKTEVNGFVH |
- |
Name=SALL1; Synonyms=SAL1; |
Sal-like protein 1 (Zinc finger protein SALL1) (Spalt-like
transcription factor 1) (HSal1). |
Homo sapiens (Human). |
| SHS1_YEAST |
425-428 |
QLGREIKQENENLIR |
- |
Name=SHS1; Synonyms=SEP7; OrderedLocusNames=YDL225W; |
Seventh homolog of septin 1 (Septation protein 7). |
Saccharomyces cerevisiae (Baker's yeast). |
| SHS1_YEAST |
436-439 |
NLIRSIKTESSPKFL |
- |
Name=SHS1; Synonyms=SEP7; OrderedLocusNames=YDL225W; |
Seventh homolog of septin 1 (Septation protein 7). |
Saccharomyces cerevisiae (Baker's yeast). |
| SUMO3_HUMAN |
10-13 |
KPKEGVKTENDHINL |
- |
Name=SUMO3; Synonyms=SMT3A, SMT3H1; |
Small ubiquitin-related modifier 3 precursor (SUMO-3) (Ubiquitin-like
protein SMT3A) (SMT3 homolog 1) (SUMO-2). |
Homo sapiens (Human). |
| SUMO2_HUMAN |
10-13 |
KPKEGVKTENNDHIN |
- |
Name=SUMO2; Synonyms=SMT3B, SMT3H2; |
Small ubiquitin-related modifier 2 precursor (SUMO-2) (Ubiquitin-like
protein SMT3B) (SMT3 homolog 2) (Sentrin-2) (HSMT3) (SUMO-3). |
Homo sapiens (Human). |
| SP100_HUMAN |
296-299 |
VRLVDIKKEKPFSNS |
- |
Name=SP100; |
Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear dot-associated
Sp100 protein) (Lysp100b). |
Homo sapiens (Human). |
| SP3_HUMAN |
550-553 |
PADIRIKEEEPDPEE |
- |
Name=SP3; |
Transcription factor Sp3 (SPR-2). |
Homo sapiens (Human). |
| TDG_HUMAN |
329-332 |
AKKMAVKEEKYDPGY |
- |
Name=TDG; |
G/T mismatch-specific thymine DNA glycosylase (EC 3.2.2.-). |
Homo sapiens (Human). |
| VIE1_HCMVA |
449-452 |
EDTVSVKSEPVSEIE |
- |
Name=UL123; |
55 kDa immediate-early protein 1 (IE1). |
Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5). |
| SATB2_HUMAN |
232-235 |
KKYKKIKVERVEREN |
- |
Name=SATB2; Synonyms=KIAA1034; |
DNA-binding protein SATB2 (Special AT-rich sequence-binding protein
2). |
Homo sapiens (Human). |
| SATB2_HUMAN |
349-352 |
PIPRAVKPEPTNSSV |
- |
Name=SATB2; Synonyms=KIAA1034; |
DNA-binding protein SATB2 (Special AT-rich sequence-binding protein
2). |
Homo sapiens (Human). |