#ELM_Instance_Download_Version: 1.4 #ELM_Instance_Download_Date: 2024-03-28 19:26:09.671194 #Origin: asimov #Type: tsv #NumInstances: 25 "Accession" "ELMType" "ELMIdentifier" "ProteinName" "Primary_Acc" "Accessions" "Start" "End" "References" "Methods" "InstanceLogic" "PDB" "Organism" "ELMI001943" "DEG" "DEG_CRL4_CDT2_1" "CDN1A_HUMAN" "P38936" "P38936 Q14010 Q9BUT4" "145" "157" "18703516 18794347" "alanine scanning; anti tag coimmunoprecipitation; coimmunoprecipitation; fluorescence technology; rna interference; ubiquitinase assay; western blot" "true positive" "" "Homo sapiens" "ELMI002104" "DEG" "DEG_CRL4_CDT2_1" "CDN1C_HUMAN" "P49918" "P49918" "270" "282" "22634751" "coimmunoprecipitation; mutation analysis" "true positive" "" "Homo sapiens" "ELMI001942" "DEG" "DEG_CRL4_CDT2_1" "CDT1_HUMAN" "Q9H211" "Q9H211 Q86XX9 Q96CJ5 Q96GK5 Q96H67 Q96HE6 Q9BWM0" "4" "15" "16861906" "coimmunoprecipitation; rna interference; western blot" "true positive" "" "Homo sapiens" "ELMI001941" "DEG" "DEG_CRL4_CDT2_1" "CDT1_XENLA" "Q9I9A7" "Q9I9A7 Q6GQH3" "4" "16" "19595719" "alanine scanning; coimmunoprecipitation; glutathione s tranferase tag; mutation analysis; ubiquitinase assay; western blot" "true positive" "" "Xenopus laevis" "ELMI001944" "DEG" "DEG_CRL4_CDT2_1" "Q91603_XENLA" "Q91603" "Q91603" "172" "184" "20606006" "coimmunoprecipitation; glutathione s tranferase tag; immunodepleted coimmunoprecipitation; mutation disrupting interaction; pull down; ubiquitinase assay; western blot" "true positive" "" "Xenopus laevis" "ELMI001945" "DEG" "DEG_CRL4_CDT2_1" "SETD8_HUMAN" "Q9NQR1" "Q9NQR1 A8K9D0 Q86W83 Q8TD09" "220" "231" "21220508 20932472" "alanine scanning; coimmunoprecipitation; fluorescence technology; mutation disrupting interaction; rna interference; ubiquitinase assay; western blot" "true positive" "" "Homo sapiens" "ELMI003914" "LIG" "LIG_PCNA_PIPBox_1" "APEX2_HUMAN" "Q9UBZ4" "Q9UBZ4 Q9Y5X7" "390" "399" "11376153" "colocalization; mutation analysis; pull down" "true positive" "" "Homo sapiens" "ELMI000791" "LIG" "LIG_PCNA_PIPBox_1" "CDN1A_HUMAN" "P38936" "P38936 Q14010 Q9BUT4" "144" "153" "8861913" "x-ray crystallography" "true positive" "1AXC" "Homo sapiens" "ELMI003920" "LIG" "LIG_PCNA_PIPBox_1" "DNLI1_HUMAN" "P18858" "P18858 B2RAI8 Q32P23" "2" "11" "28073635 9649448" "coimmunoprecipitation; colocalization; glutathione s tranferase tag; green fluorescent protein tag; mutation analysis; pull down; surface plasmon resonance" "true positive" "" "Homo sapiens" "ELMI000797" "LIG" "LIG_PCNA_PIPBox_1" "DNMT1_HUMAN" "P26358" "P26358 A0AV63 B7ZLW6 Q9UHG5 Q9ULA2 Q9UMZ6" "164" "173" "31235252 9302295 28073635" "competition binding; electron microscopy; fluorescence polarization spectroscopy; glutathione s tranferase tag; isothermal titration calorimetry; not specified; nuclear magnetic resonance; pull down; surface plasmon resonance; x-ray crystallography" "true positive" "6K3A" "Homo sapiens" "ELMI001231" "LIG" "LIG_PCNA_PIPBox_1" "DPOD3_HUMAN" "Q15054" "Q15054 B7ZAI6" "456" "465" "15576034" "isothermal titration calorimetry; x-ray crystallography" "true positive" "1U76 1VYJ" "Homo sapiens" "ELMI000794" "LIG" "LIG_PCNA_PIPBox_1" "ERCC5_HUMAN" "P28715" "P28715 A6NGT4 Q5JUS4 Q5JUS5 Q7Z2V3 Q8IZL6 Q8N1B7 Q9HD59" "990" "999" "9305916" "not specified" "true positive" "" "Homo sapiens" "ELMI003915" "LIG" "LIG_PCNA_PIPBox_1" "EXO1_HUMAN" "Q9UQ84" "Q9UQ84 O60545 O75214 O75466 Q5T396 Q96IJ1 Q9UG38 Q9UNW0" "788" "797" "20970388" "colocalization; isothermal titration calorimetry; mutation analysis" "true positive" "" "Homo sapiens" "ELMI000792" "LIG" "LIG_PCNA_PIPBox_1" "FEN1_HUMAN" "P39748" "P39748" "337" "346" "9178907 3113402 15576034 28073635 15616578" "isothermal titration calorimetry; mutation analysis; surface plasmon resonance; x-ray crystallography" "true positive" "1U7B 1UL1" "Homo sapiens" "ELMI003918" "LIG" "LIG_PCNA_PIPBox_1" "MSH3_HUMAN" "P20585" "P20585 A1L480 A1L482 A6NMM6 Q6PJT5 Q86UQ6 Q92867" "21" "30" "11005803" "coimmunoprecipitation; glutathione s tranferase tag; mutation analysis" "true positive" "" "Homo sapiens" "ELMI000799" "LIG" "LIG_PCNA_PIPBox_1" "MSH6_HUMAN" "P52701" "P52701 O43706 O43917 Q8TCX4 Q9BTB5" "4" "13" "11005803 31134302 11056476" "glutathione s tranferase tag; mutation analysis; not specified; pull down; surface plasmon resonance" "true positive" "" "Homo sapiens" "ELMI003916" "LIG" "LIG_PCNA_PIPBox_1" "MUTYH_HUMAN" "Q9UIF7" "Q9UIF7 D3DPZ4 Q15830 Q9UBP2 Q9UBS7 Q9UIF4 Q9UIF5 Q9UIF6" "523" "532" "11092888" "coimmunoprecipitation; glutathione s tranferase tag; mutation analysis; pull down" "true positive" "" "Homo sapiens" "ELMI003910" "LIG" "LIG_PCNA_PIPBox_1" "PAF15_HUMAN" "Q15004" "Q15004 A6NNU5 A8K3Y3 G9G694 G9G696" "62" "71" "25762514 30102405" "electron microscopy; fluorescence polarization spectroscopy; isothermal titration calorimetry; nuclear magnetic resonance; x-ray crystallography" "true positive" "4D2G 6EHT 6GWS" "Homo sapiens" "ELMI003917" "LIG" "LIG_PCNA_PIPBox_1" "POLH_HUMAN" "Q9Y253" "Q9Y253 Q7L8E3 Q96BC4 Q9BX13" "701" "710" "19208623" "glutathione s tranferase tag; mutation analysis; pull down; surface plasmon resonance; x-ray crystallography" "true positive" "2VZK" "Homo sapiens" "ELMI003919" "LIG" "LIG_PCNA_PIPBox_1" "RECQ5_HUMAN" "O94762" "O94762 Q6P4G0 Q9H0B1 Q9P1W7 Q9UNC8" "964" "973" "30655288" "nuclear magnetic resonance" "true positive" "" "Homo sapiens" "ELMI003911" "LIG" "LIG_PCNA_PIPBox_1" "RNH2B_HUMAN" "Q5TBB1" "Q5TBB1 G3XAJ1 Q05DR2 Q6PK48 Q9HAF7" "294" "303" "21245041" "coimmunoprecipitation; colocalization; green fluorescent protein tag; mutation analysis; x-ray crystallography" "true positive" "3P87" "Homo sapiens" "ELMI003909" "LIG" "LIG_PCNA_PIPBox_1" "SPRTN_HUMAN" "Q9H040" "Q9H040 B1AKT0 B5MEF7 Q5TE78 Q6UWW6 Q96BC5 Q96KA0" "325" "334" "27084448" "isothermal titration calorimetry; mutation analysis; x-ray crystallography" "true positive" "5IY4" "Homo sapiens" "ELMI003913" "LIG" "LIG_PCNA_PIPBox_1" "TRAIP_HUMAN" "Q9BWF2" "Q9BWF2 B5BU84 B5BUL3 O00467" "460" "469" "26711499" "colocalization; deletion analysis; green fluorescent protein tag; isothermal titration calorimetry; mutation analysis; nuclear magnetic resonance; pull down; rna interference; x-ray crystallography" "true positive" "4ZTD" "Homo sapiens" "ELMI000798" "LIG" "LIG_PCNA_PIPBox_1" "UNG_HUMAN" "P13051" "P13051 A8K5M6 B2R8Y1 O00637 O00719 Q93028" "4" "13" "10393198" "not specified" "true positive" "" "Homo sapiens" "ELMI003912" "LIG" "LIG_PCNA_PIPBox_1" "ZRAB3_HUMAN" "Q5FWF4" "Q5FWF4 B3KYA1 B4E375 B5MDI3 D3DP76 E9PBP0 Q53SM1 Q6P2C4 Q8N1P4 Q9H0E8" "519" "528" "28621305" "x-ray crystallography" "true positive" "5MLO" "Homo sapiens"