LIG_COP1
ELM server details
ELM
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Functional site class:
COP1 binding motif
Functional site description:
Motif found in plant photomorphogenesis regulators and in mammalian transcription factors.
ELM(s): LIG_COP1
LIG_COP1 description: The Constitutive photomorphogenesis protein COP1 was first identified by plant genetics to be involved in light-controlled development. COP1 is a ring finger protein and has now been shown to have ubiquitin ligase activity in both the plant and mammalian context. Proteins controlled by plant COP1 include PIF3, HY5 and LAF1. In animals COP1 has been shown to regulate destruction of p53 and interact with Jun/AP-1.
Pattern: [DE][DE]...VP[DE]
Present in taxon(s): Metazoa  Homo sapiens  Arabidopsis thaliana  Viridiplantae  
Not represented in taxon(s):

o See instances for LIG_COP1


o Abstract

COP1 is a negative regulator of photomorphogenic development in Arabidopsis thaliana. It cooperates with COP9 signalosome promoting degradation of positive regulators like HY5.
Mammalian homologues were identified. Recently the human ortholog, huCOP1, was characterised and it has been shown that interacts with members of JUN family, namely c-jun and junD.
All COP1 interacting partners share a conserved motif consisting of a short stretch of negatively charged residues followed by the sequence VP[DE]. It has been demostrated that COP1 recognised the motif via its WD40 repeats domain.
huCOP1 seems to regulate AP-1 transcription activity. Relationship between huCOP1 and CSN signalosome (implicated in modulation of AP-1-dependent transcription) has to be tested.

o Selected references

Ang LH, Chattopadhyay S, Wei N, Oyama T, Okada K, Batschauer A, Deng XW
Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development.
Mol Cell 1998 Jan;1(2) : 213-22.
PMID: 9659918

Bianchi E, Denti S, Catena R, Rossetti G, Polo S, Gasparian S, Putignano S, Rogge L, Pardi R
Characterization of human constitutive photomorphogenesis protein 1, a RING finger ubiquitin ligase that interacts with Jun transcription factors and modulates their transcriptional activity.
J Biol Chem 2003 May 30;278(22) : 19682-90.
PMID: 12615916

Dornan D, Wertz I, Shimizu H, Arnott D, Frantz GD, Dowd P, O'Rourke K, Koeppen H, Dixit VM
The ubiquitin ligase COP1 is a critical negative regulator of p53.
Nature 2004 May 6;429(6987) : 86-92.
PMID: 15103385

Holm M, Hardtke CS, Gaudet R, Deng XW
Identification of a structural motif that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1.
EMBO J 2001 Jan 15;20(1) : 118-27.
PMID: 11226162

Serino G, Deng XW
The COP9 signalosome: regulating plant development through the control of proteolysis.
Annu Rev Plant Biol 2003;54() : 165-82.
PMID: 14502989

Yi C, Wang H, Wei N, Deng XW
An initial biochemical and cell biological characterization of the mammalian homologue of a central plant developmental switch, COP1.
BMC Cell Biol 2002 Dec 4;3(1) : 30.
PMID: 12466024

o This ELM has been assigned the following Gene Ontology (GO) terms for biological process, cellular component and molecular function.

Biological Process
  regulation of transcription
  negative regulation of photomorphogenesis
Cellular Component
  nucleus
Molecular Function
  protein binding

 

o Instances for LIG_COP1

SequencePositionSubsequence
(Click for evidence information)
PDBGene NameProtein DescriptionOrganism
HY5_ARATH 38-45 GIESDEEIRRVPEFGGEAV - Name=HY5; Synonyms=BZIP56; OrderedLocusNames=At5g11260; ORFNames=F2I11_150; Transcription factor HY5 (Protein LONG HYPOCOTYL 5) (AtbZIP56). Arabidopsis thaliana (Mouse-ear cress).
STH_ARATH 229-236 RYDDEEEHFLVPDLG - Name=STH; OrderedLocusNames=At2g31380; ORFNames=T28P16.13; Salt tolerance-like protein. Arabidopsis thaliana (Mouse-ear cress).
JUN_HUMAN 227-234 LQALKEEPQTVPEMPGETP - Name=JUN; Transcription factor AP-1 (Activator protein 1) (AP1) (Proto-oncogene c-jun) (V-jun avian sarcoma virus 17 oncogene homolog) (p39). Homo sapiens (Human).
JUND_HUMAN 241-248 LAALKDEPQTVPDVPSFGE - Name=JUND; Transcription factor jun-D. Homo sapiens (Human).